YRC Public Data Repository - Protein Structure Prediction

Protein:	atp-5
Organism:	Caenorhabditis elegans
Length:	191 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for atp-5.

Description	E-value	Query Range	Subject Range
gi\|157762988 - gi\|157762988\|ref\|XP_001673836.1\| Hypothetical protein CBG23108 [Caenorhabditis briggsae AF16] gi\|187021280, gi... - gi\|39591951\|emb\|CAE75171.1\| Hypothetical protein CBG23108 [Caenorhabditis briggsae], gi\|187021280\|em...	240.0	[0..1]	[191..1]
ATP5H_MOUSE - ATP synthase subunit d, mitochondrial OS=Mus musculus GN=Atp5h PE=1 SV=3	231.0	[0..4]	[153..2]
ATP5H_RAT - ATP synthase subunit d, mitochondrial OS=Rattus norvegicus GN=Atp5h PE=1 SV=3	226.0	[0..4]	[153..2]
gi\|109118139 - gi\|109118139\|ref\|XP_001092326.1\| PREDICTED: similar to ATP synthase, H+ transporting, mitochondrial ...	216.0	[0..4]	[153..2]
gi\|114670390 - gi\|114670390\|ref\|XP_001138674.1\| PREDICTED: ATP synthase, H+ transporting, mitochondrial F0 complex,... ATP5H - ATP synthase, H+ transporting, mitochondrial F0 complex, subunit d	215.0	[0..4]	[153..2]
ATP5H_BOVIN - ATP synthase subunit d, mitochondrial OS=Bos taurus GN=ATP5H PE=1 SV=2	213.0	[0..4]	[153..2]

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Predicted Domain #1

Region A:
Residues: [1-191]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGAAKRVAT SSVNWSKLAE RLVPEHAAEL TRVKGVSGTF QSAVSQLPAD LPKIDFAALK  60
   61 KALPAHSAVL DSLQKQYESV KIPYGEVPAE YLKEVDQWVD YNNARIKLHE VKVADGLQEA 120
  121 KKVEEKWAKA PPVEHFDRQH FVEYFPAHFY DLRYQNRIPD PCNIGLNETP EIENRFKDYK 180
  181 VLRRADKVDD H

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	55.30103
Match:	2clyB
Description:	No description for 2clyB was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits