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View Structure Prediction Details

Protein: CE15552
Organism: Caenorhabditis elegans
Length: 523 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE15552.

Description E-value Query
Range
Subject
Range
gi|187024563, gi... - gi|39594646|emb|CAE72224.1| Hypothetical protein CBG19336 [Caenorhabditis briggsae], gi|187024563|em...
gi|157764684 - gi|157764684|ref|XP_001674685.1| Hypothetical protein CBG19336 [Caenorhabditis briggsae AF16]
333.0 [0..1] [523..1]

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Predicted Domain #1
Region A:
Residues: [1-187]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLDILLQYAP NWTEHATWLV IVAFIFAFFV SYGMGANDSC NDWGPAVGAG TVTLPQAYFL  60
   61 SGILNVAGAV LLGYKVIETL RTGIIEFDIF DVYAQYNETT HQYDTVDHCG NATLIGGWKA 120
  121 PDILPGAEPL ECAKYTSIDF MLTQTASLAG VAAFMILSSC FKIPVSATHA IVGASVATSF 180
  181 YIRGNVG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [188-305]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IKWGEIINIV VSWFISPIIA GTIAATMYYI IKYSVLIRQD TFKWALRLCP IFMCFTLVVN  60
   61 LYACIYDGSK YLGLDRLDAI EAFLISVAIG VTGWAILTFP LRNWLPNRAH RLYDKETV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [306-523]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KMQRRMEAGK ATKSHKIKDM REPDVADNIK ELPWYKYLWA YVPEDRLTKK VFNTLQIISS  60
   61 SMLSFTHGAN DTGNTIAPLL AIWLCYESGY AFGNAETRDD TQMLLAYGSL AMIVGFVTLG 120
  121 HRTIKLLAHE MTVDMSPISG FCIEVGTAFT VLICVKFGIP ISSTHCTVGA VVFVGMAKST 180
  181 SEGVSFGTFR KICFFWLLCF PMSAIIGIGA TIILQQFL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle