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View Structure Prediction Details

Protein: inx-12
Organism: Caenorhabditis elegans
Length: 408 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for inx-12.

Description E-value Query
Range
Subject
Range
gi|39586248, gi|... - gi|39586248|emb|CAE66659.1| Hypothetical protein CBG11996 [Caenorhabditis briggsae], gi|187029835|em...
411.0 [0..1] [408..1]

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Predicted Domain #1
Region A:
Residues: [1-138]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNVIQNLLSA VSPQPDGDFV DKLNYCATTI GLVLASAFIT GWSFVGSPID CWFPAYYKGW  60
   61 WAEYALDYCY VQNTFFVPFS EDKAERSYNW EQLVADKQNT TSLKQTNQIG YYQWVPFILA 120
  121 LQAMLFYFPV VIWRLFYG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [139-408]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGQNVTSLC NTCTATEGNE ESRKGTITTI AGYISQKRHR NLIVKQLSGF QNRANGSAVI  60
   61 TSYLFMKALF LINVLFQFVL LKRMLGVDSY FWGAEVTSDL WSGNEWPETG NFPRVTMCEY 120
  121 EVRNLDNIHK HSVQCVLMIN MFNEKIFVAL WWWLCFLTVV TITNTIYWFW RASGTSVSKN 180
  181 FIRPYVEDID PKVKNNRGKL QQFVSEFLSP DTVFILRLIE LNNGKTPVVE LIRDMWRRFN 240
  241 TAVPPPYSAP PLLVKDGAPL LKNFQDESEM 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle