YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CE15359
Organism: Caenorhabditis elegans
Length: 521 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE15359.

Description E-value Query
Range
Subject
Range
CE15361 - status:Partially_confirmed UniProt:O17018 protein_id:AAB69953.1
497.0 [0..1] [521..1]

Back

Predicted Domain #1
Region A:
Residues: [1-113]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEREALLHTS SFPKNSESSF PTKSISKSLL IIFALSNIAF FICFSKIKFS IGGSEIVRPE  60
   61 VIVSVPTETS TTTSTSLSST SQFISSTNAP ALRSPENKIF PQNSTNCPYE EWN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [114-227]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QVRTDFIPNT DLHKQWSKKW KSNFKYLYHT LPSVAAAFLH EDQIVVTLTA ENQADEIVYC  60
   61 RYYDCRRREI MDHFESTIFP RGTVYCARRP GAKFITVSKT LKKILEYSVP IVSR

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [228-378]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LGKPQHYFTV CMAPLYGDEP KFLQIVDFIE YHKLQGATFF HIYLRNVSDY DRVLLDNYAK  60
   61 TGDIELITLQ DHFWRADYMW HNGQINDCHH RNRYFSKWTA LIDIDERLEM KSDKFKIVAD 120
  121 YLDSIQDDSI ANLHFRVKWV MKHHDTPAKY E

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.07
Match: 1h7lA
Description: Spore coat polysaccharide biosynthesis protein SpsA
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
transferase activity 0.117862115002202 bayes_pls_golite062009
catalytic activity 0.075405962065044 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 0.00643109218840909 bayes_pls_golite062009

Predicted Domain #4
Region A:
Residues: [379-521]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NETQLKREML FHKYQNLSQL GAIWDQPKCI IRPENVAIMT IHGPREMYKG EKMTVVPENV  60
   61 GFIRHYRNVE LRIFHKAFER MMSHAPFNIS PIDKDIDQDL SKKIMDRVKW IYEIVQPTCE 120
  121 QKAKMYRVES TSPSCNNETK TLN

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle