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View Structure Prediction Details

Protein: CE15324
Organism: Caenorhabditis elegans
Length: 483 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE15324.

Description E-value Query
Range
Subject
Range
gi|109092682 - gi|109092682|ref|XP_001114682.1| PREDICTED: similar to protein tyrosine phosphatase, receptor type, ...
363.0 [0..1] [483..17]

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Predicted Domain #1
Region A:
Residues: [1-84]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPKPKKSTG AKKKVSKLNK RPSKISVVSV NERSKNERSV MQSIEQEEAT NNEIVPTPKK  60
   61 TTAQIAQQPT PTLPQIIAKQ EPEV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [85-483]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AMKTMMLPPP SDPPPPPPPV APHQPPPQLA TSAQPPQPPV INSQLPRMSP APAIPPSMAQ  60
   61 PLLQSPSPGA DIAIRRPSKE KTDEKSVDET GGSDKKKRTE VICSWIRLVL QNGVAGLKKE 120
  121 YRDSPNEAPE DIATSFLGNP TRNRYRNIPC CDITRVKLTD DPHFYIHANL VSSGPNPRRF 180
  181 ICTQAPLNGT IEEFWKMIIV TGIEYIVMLC ELVEKGKPKS AEYFPSQIGQ TTKIGRLCTV 240
  241 TKESRVDIDK TLVMSTMRIS KPGDNAVVKI VKHIHWRNWP DHGVPDNFLS PFRLLTVVKN 300
  301 CTKPIVVHCS AGVGRTGTLA LILIILESIC LPDFIGVPRL LAKLREERFR AVQTEMQYLY 360
  361 AHRCVLEYLA LKKYVQSRED FAKFAKDYEQ ALAMCPKEA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 78.0
Match: 2b3oA
Description: Crystal structure of human tyrosine phosphatase SHP-1
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle