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View Structure Prediction Details

Protein: nekl-2
Organism: Caenorhabditis elegans
Length: 357 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nekl-2.

Description E-value Query
Range
Subject
Range
gi|53988148 - gi|53988148|gb|AAV28169.1| calcium-dependent protein kinase 1 [Vicia faba]
292.0 [0..4] [344..27]

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Predicted Domain #1
Region A:
Residues: [1-357]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDNYEKVRVV GRGAFGVCWL CRGKNDASHQ KVIIKLINTH GMTEKEENSI QSEVNLLKKV  60
   61 QHPLIIGYID SFIMDNQLGI VMQYAEGGTL ERLINDQRAI KDSNMREYFP EKTVLDYFTQ 120
  121 ILIALNHMHQ KNIVHRDLKP QNILMNRRKT VLKLSDFGIS KELGTKSAAS TVIGTPNYLS 180
  181 PEICESRPYN QKSDMWSLGC VLYELLQLER AFDGENLPAI VMKITRSKQN PLGDHVSNDV 240
  241 KMLVENLLKT HTDKRPDVSQ LLSDPLVLPY LISIHCDLGR IEPPPTDKRK PSASLSSRLR 300
  301 TYPTQSTLRP YSLSSNAPTT HLTQLTPMPS HIDSGFFSSG RTSNQRTQSR SQVHSKY

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 72.09691
Match: 2bdwA
Description: Crystal Structure of the Auto-Inhibited Kinase Domain of Calcium/Calmodulin Activated Kinase II
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle