YRC Public Data Repository - Protein Structure Prediction

Protein:	CE15120
Organism:	Caenorhabditis elegans
Length:	204 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE15120.

Description	E-value	Query Range	Subject Range
gi\|91079186 - gi\|91079186\|ref\|XP_968511.1\| PREDICTED: similar to CG12348-PC, isoform C [Tribolium castaneum]	156.0	[0..4]	[204..747]
KCND1 - potassium voltage-gated channel, Shal-related subfamily, member 1	155.0	[0..2]	[204..38]
gi\|114688496 - gi\|114688496\|ref\|XP_521053.2\| PREDICTED: potassium voltage-gated channel, Shal-related subfamily, me...	154.0	[0..2]	[204..38]
gi\|109130676 - gi\|109130676\|ref\|XP_001104621.1\| PREDICTED: similar to potassium voltage-gated channel, Shal-related...	153.0	[0..2]	[204..38]
gi\|50731321 - gi\|50731321\|ref\|XP_425660.1\| PREDICTED: similar to potassium channel [Gallus gallus]	153.0	[0..4]	[204..194]
gi\|2134137, gi\|3... - gi\|387893\|gb\|AAA16340.1\| potassium channel, pir\|\|I51532 potassium channel - African clawed frog, gi...	153.0	[0..4]	[204..34]
gi\|149028439, gi... - gi\|34933431\|ref\|XP_217601.2\| PREDICTED: similar to Potassium voltage-gated channel subfamily D membe...	152.0	[0..2]	[204..38]
KCND1_MOUSE - Potassium voltage-gated channel subfamily D member 1 OS=Mus musculus GN=Kcnd1 PE=1 SV=1	152.0	[0..2]	[204..38]

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Predicted Domain #1

Region A:
Residues: [1-204]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNNIIKLNV GGKEFSTTEA TLTKFEGYFK QKLKTRGKIW QTTLFIDRSP THFEIILNFM  60
   61 RDGKVDLPET LKELMPIFRE TEYYTLASLV EQCGGAIASL GGGPEFDKFR GIIPTEAVVS 120
  121 INNSDVDNNQ VEVGNYYVNY IRAATYDRFM KWKNSSKTEQ YAEQEDTPST MFWKIVLILC 180
  181 IYILCEYLVQ KFRPQKSRQQ KLFI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.154902
Match:	2a79B
Description:	Mammalian Shaker Kv1.2 potassium channel- beta subunit complex
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits