YRC Public Data Repository - Protein Structure Prediction

Protein:	CE15114
Organism:	Caenorhabditis elegans
Length:	208 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE15114.

Description	E-value	Query Range	Subject Range
CE36832 - status:Predicted UniProt:O16708 protein_id:AAB66175.2	216.0	[0..29]	[208..135]
gi\|14042295 - gi\|14042295\|dbj\|BAB55188.1\| unnamed protein product [Homo sapiens]	140.0	[0..1]	[137..47]
tr\|M3X4F5\|M3X4F5... - Potassium channel tetramerization domain containing 10 OS=Felis catus GN=KCTD10 PE=4 SV=1 ENSPTRT00000009949 - null gi\|151554137, gi... - gi\|76639197\|ref\|XP_613559.2\| PREDICTED: similar to MSTP028 [Bos taurus], gi\|155372153\|ref\|NP_0010946...	140.0	[0..1]	[137..50]
gi\|50756506 - gi\|50756506\|ref\|XP_415191.1\| PREDICTED: similar to potassium channel tetramerisation domain containi...	139.0	[0..1]	[137..142]
gi\|114646841 - gi\|114646841\|ref\|XP_001137814.1\| PREDICTED: similar to MSTP028 isoform 2 [Pan troglodytes]	138.0	[0..1]	[137..58]
gi\|109098659 - gi\|109098659\|ref\|XP_001105027.1\| PREDICTED: similar to potassium channel tetramerisation domain cont...	138.0	[0..1]	[137..58]

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Predicted Domain #1

Region A:
Residues: [1-208]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVGPPHSSCY NISPKHLELE FALKNISPTS PIFIDRPYKH FGTILNFLRD GDVILPNSME  60
   61 SLKELPREAI IYELTGLIGK CQEAIARLGG EPTTVSLSKI EQNATPPTIG DPVTSSSGDT 120
  121 DSPQILEQPD NNEIQKSWIR ERILNIVNST HWLISQCREF LDAAEDALLF VEGNIEVISS 180
  181 TIGNIIRLLQ SARQFRIFYR LFGMFFTF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.30103
Match:	2a79B
Description:	Mammalian Shaker Kv1.2 potassium channel- beta subunit complex
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits