YRC Public Data Repository - Protein Structure Prediction

Protein:	btb-13
Organism:	Caenorhabditis elegans
Length:	225 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for btb-13.

Description	E-value	Query Range	Subject Range
gi\|91077018 - gi\|91077018\|ref\|XP_966622.1\| PREDICTED: similar to CG9924-PC, isoform C [Tribolium castaneum]	201.0	[0..4]	[225..204]
gi\|37534558, gi\|... - gi\|37534558\|ref\|NP_921581.1\| putative speckle-type protein [Oryza sativa (japonica cultivar-group)],...	190.0	[0..6]	[224..129]
gi\|108878796, gi... - gi\|157110262\|ref\|XP_001651027.1\| speckle-type poz protein [Aedes aegypti], gi\|108878796\|gb\|EAT43021....	186.0	[0..4]	[225..221]
gi\|110763136 - gi\|110763136\|ref\|XP_395294.3\| PREDICTED: similar to CG9924-PC, isoform C, partial [Apis mellifera]	186.0	[0..4]	[225..151]
gi\|74151525 - gi\|74151525\|dbj\|BAE38870.1\| unnamed protein product [Mus musculus]	183.0	[0..4]	[225..129]

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Predicted Domain #1

Region A:
Residues: [1-147]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEKIIEWKN QTCFSEKPIS IIDSGITCNV KIVENRVHWR FAWVGAEPVY GLAGHTPLDE  60
   61 YETMFAKSNR TNAVLMVDGK KLHVNKTLLS LHSTHFKKLF QSEGDQLPVD NISYEDFALL 120
  121 ISTIQPNPIY PNHFTAEKIL ELAVRFR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.69897
Match:	2nn2A
Description:	No description for 2nn2A was found.

Predicted Domain #2

Region A:
Residues: [148-225]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IPAATALVEN QLVNYSSFSH GKLLLIADKY GLERLLDQQV RKIYTKEVAE ELKTCAEFPQ  60
   61 LSDNAKAKVA DFLLPLFT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	4.39794
Match:	2eqxA
Description:	No description for 2eqxA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits