YRC Public Data Repository - Protein Structure Prediction

Protein:	arl-8
Organism:	Caenorhabditis elegans
Length:	185 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for arl-8.

Description	E-value	Query Range	Subject Range
gi\|421942, gi\|311907 - pir\|\|S34253 GTP-binding protein, ras-related - common tobacco, gi\|311907\|emb\|CAA51011.1\| ras-related...	182.0	[0..13]	[184..1]
gi\|1370166 - gi\|1370166\|emb\|CAA98160.1\| RAB1C [Lotus japonicus]	182.0	[0..13]	[184..1]
RIC1_ORYSJ - Ras-related protein RIC1 OS=Oryza sativa subsp. japonica GN=RIC1 PE=2 SV=2 gi\|125526416 - gi\|125526416\|gb\|EAY74530.1\| hypothetical protein OsI_02420 [Oryza sativa Indica Group] RIC1_ORYSA - Ras-related protein RIC1 - Oryza sativa (Rice)	182.0	[0..13]	[184..1]
gi\|303734, gi\|738942 - gi\|738942\|prf\|\|2001457K GTP-binding protein, gi\|303734\|dbj\|BAA02118.1\| GTP-binding protein [Pisum sa... gi\|1098293, gi\|4... - pir\|\|S41430 GTP-binding protein, ras-like (clone vfa-ypt1) - fava bean, gi\|452359\|emb\|CAA82707.1\| g...	182.0	[0..13]	[184..1]
gi\|4586580 - gi\|4586580\|dbj\|BAA76422.1\| rab-type small GTP-binding protein [Cicer arietinum]	182.0	[0..13]	[184..1]
RIC1_ORYSA - (P40392) Ras-related protein RIC1	182.0	[0..13]	[184..1]
gi\|89257579 - gi\|89257579\|gb\|ABD65068.1\| GTP-binding protein, putative [Brassica oleracea]	181.0	[0..13]	[184..1]
gi\|16974365 - gi\|16974365\|gb\|AAL31108.1\| AT4g17530/dl4800c [Arabidopsis thaliana]	181.0	[0..13]	[184..1]
gi\|109105440 - gi\|109105440\|ref\|XP_001118047.1\| PREDICTED: similar to RAB1B, member RAS oncogene family [Macaca mul...	180.0	[0..13]	[184..71]

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Predicted Domain #1

Region A:
Residues: [1-185]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLAMVNKVLD WIRSLFWKEE MELTLVGLQN SGKTTFVNVI ASGQFTEDMI PTVGFNMRKI  60
   61 TKGNVTIKLW DIGGQPRFRS MWERYCRGVN AIVFMVDAAD EEKLEASRNE LMQLLDKPQL 120
  121 DAIPVLVLGN KKDLPGALDE RQLIERMNLS SIQNREICCY SISCKEKENI DITLQWLIDH 180
  181 SKAQR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.69897
Match:	2h18A
Description:	No description for 2h18A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits