YRC Public Data Repository - Protein Structure Prediction

Protein:	CE14930
Organism:	Caenorhabditis elegans
Length:	257 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE14930.

Description	E-value	Query Range	Subject Range
gi\|62955707, gi\|... - gi\|62955707\|ref\|NP_001017867.1\| glucosamine-6-phosphate deaminase 1 [Danio rerio], gi\|62202396\|gb\|AA...	277.0	[0..4]	[252..2]
gi\|50747027 - gi\|50747027\|ref\|XP_420726.1\| PREDICTED: similar to glucosamine-6-phosphate deaminase 2; glucosamine-...	276.0	[0..5]	[253..3]
gi\|62089394 - gi\|62089394\|dbj\|BAD93141.1\| glucosamine-6-phosphate deaminase 2 variant [Homo sapiens]	275.0	[0..5]	[250..38]
gi\|114593868 - gi\|114593868\|ref\|XP_001143245.1\| PREDICTED: similar to glucosamine-6-phosphate deaminase 2 variant [...	275.0	[0..5]	[250..126]
gi\|73974964 - gi\|73974964\|ref\|XP_849417.1\| PREDICTED: similar to glucosamine-6-phosphate deaminase 2 isoform 1 [Ca...	274.0	[0..5]	[250..3]
gi\|148226212, gi... - gi\|38014417\|gb\|AAH60459.1\| MGC68566 protein [Xenopus laevis], gi\|148226212\|ref\|NP_001083469.1\| hypot...	273.0	[0..4]	[250..2]
GNPI2_BOVIN - Glucosamine-6-phosphate isomerase 2 OS=Bos taurus GN=GNPDA2 PE=2 SV=1	273.0	[0..5]	[250..3]
GNPI2_MOUSE - Glucosamine-6-phosphate isomerase 2 OS=Mus musculus GN=Gnpda2 PE=1 SV=1	273.0	[0..5]	[250..3]

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Predicted Domain #1

Region A:
Residues: [1-257]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPALNVSGD EKELILQLRR YLEEKLTYLL DQNGTVSIGV SGGSMPRVFS KAILSLPQEQ  60
   61 LNWKRIRIFM VDERNVDLDS EESNQGEYLR LFPNELRDVF VPMQIFKDPC LTAQHYEISL 120
  121 RKYLLPEQLN NTARFDILFL GVGPDGHTAS IFPGKERLEK ITELNWVSVI TDSPKPPPSR 180
  181 ITLTLQTLQH AKNVAFIICG KQKAEIVRGI CDRDQKYPAA QARPFNDKLT LFLDEDAATG 240
  241 VPDRDSSDSD SPPPFDG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	53.154902
Match:	1y89A
Description:	Crystal Structure of devB protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits