YRC Public Data Repository - Protein Structure Prediction

Protein:	csc-1
Organism:	Caenorhabditis elegans
Length:	249 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for csc-1.

Description	E-value	Query Range	Subject Range
gi\|157752490 - gi\|157752490\|ref\|XP_001679957.1\| Hypothetical protein CBG20672 [Caenorhabditis briggsae AF16] gi\|187022961, gi... - gi\|39591203\|emb\|CAE73256.1\| Hypothetical protein CBG20672 [Caenorhabditis briggsae], gi\|187022961\|em...	296.0	[0..1]	[249..1]

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Predicted Domain #1

Region A:
Residues: [1-122]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPRKIKKDP AVVAMADTLE TRVKDLLEEY KKKLREVALQ TAKAESDRII ATIKPKYRDM  60
   61 PIMEFLASPP DDFYIESGEE EEEGEAAVAV KQELPSEPDM EIDDAAAAQK TSIPIGQNSG 120
  121 RN

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Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [123-249]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TVQVKQEPEI DDDAAHETSI PIAPSGQNSG RNTAADEHRR NEIITPAGQV LPLPTLQPEK  60
   61 PFRAPHVDEE IAFSVNGSPL VLAGRTTATA AGKENRKKSK KSGAASKKAA AAAGPLQPET 120
  121 ENAGTSV