YRC Public Data Repository - Protein Structure Prediction

Protein:	CE14716
Organism:	Caenorhabditis elegans
Length:	228 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE14716.

Description	E-value	Query Range	Subject Range
gi\|39586965, gi\|... - gi\|39586965\|emb\|CAE62900.1\| Hypothetical protein CBG07090 [Caenorhabditis briggsae], gi\|187033630\|em... gi\|157753876 - gi\|157753876\|ref\|XP_001680650.1\| Hypothetical protein CBG07090 [Caenorhabditis briggsae AF16]	297.0	[0..1]	[228..1]
SGMR1_RAT - Sigma non-opioid intracellular receptor 1 OS=Rattus norvegicus GN=Sigmar1 PE=1 SV=1	277.0	[0..10]	[198..15]
SGMR1_TRIVU - Sigma non-opioid intracellular receptor 1 OS=Trichosurus vulpecula GN=SIGMAR1 PE=2 SV=1	276.0	[0..10]	[198..15]
SGMR1_MOUSE - Sigma non-opioid intracellular receptor 1 OS=Mus musculus GN=Sigmar1 PE=1 SV=1 gi\|55250512 - gb\|AAH86109.1\| Unknown (protein for MGC:98493) [Xenopus laevis]	275.0	[0..11]	[198..16]
SGMR1_CAVPO - Sigma non-opioid intracellular receptor 1 OS=Cavia porcellus GN=SIGMAR1 PE=1 SV=1	269.0	[0..10]	[198..15]
gi\|62897357 - gi\|62897357\|dbj\|BAD96619.1\| opioid receptor, sigma 1 isoform 1 variant [Homo sapiens]	269.0	[0..18]	[198..23]
SGMR1_MUSER - Sigma non-opioid intracellular receptor 1 OS=Mustela erminea GN=SIGMAR1 PE=2 SV=1	267.0	[0..18]	[198..23]

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Predicted Domain #1

Region A:
Residues: [1-228]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALLTSKLRY LLLFYAVFQA AQFGLRWKSY DISPKQFKTI AGKAAAAPTI SQSISTLTSG  60
   61 MRTYYEPIMP SHFEWHAIQL GGLTLRMYPM LTAFTEFAAA FSAPFPTSGR PGLHWANTTC 120
  121 TVLKGKVSRF NDGTQDETSE NFASGAAFRH GQFESHVYSF EKDTYVACYG RGFLPLSSTV 180
  181 HVTSGISLGE PLSVIQFYMK QAYNYWNNLS HTLYRVFQHY KARATGEL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	112.958607
Match:	PF04622.3
Description:	No description for PF04622.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits