YRC Public Data Repository - Protein Structure Prediction

Protein:	snr-2
Organism:	Caenorhabditis elegans
Length:	160 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for snr-2.

Description	E-value	Query Range	Subject Range
gi\|112305, gi\|206694 - gi\|206694\|gb\|AAA42059.1\| snRNP-associated polypeptide N, pir\|\|A35448 small nuclear ribonucleoprotein...	180.0	[0..1]	[153..1]
RSMB_MACEU - Small nuclear ribonucleoprotein-associated protein B' OS=Macropus eugenii GN=SNRPB PE=2 SV=1	179.0	[0..1]	[153..1]
gi\|50540540, gi\|... - gi\|8099650\|gb\|AAF72188.1\| snRNP-associated protein; SmB [Danio rerio], gi\|50540540\|ref\|NP_991230.1\| ...	170.0	[0..1]	[153..1]
gi\|86438323 - gi\|86438323\|gb\|AAI12635.1\| SNRPB protein [Bos taurus]	169.0	[0..1]	[153..1]
gi\|114656016 - gi\|114656016\|ref\|XP_523182.2\| PREDICTED: hypothetical protein [Pan troglodytes]	167.0	[0..1]	[153..38]
gi\|114680545 - gi\|114680545\|ref\|XP_001155793.1\| PREDICTED: hypothetical protein LOC470014 isoform 1 [Pan troglodyte... gi\|119631003, gi... - gi\|45708426\|gb\|AAH03530.1\| SNRPB protein [Homo sapiens], gi\|194375339\|dbj\|BAG62782.1\| unnamed protei... gi\|109092660 - gi\|109092660\|ref\|XP_001113926.1\| PREDICTED: small nuclear ribonucleoprotein polypeptides B and B1 is...	167.0	[0..1]	[153..1]
gi\|53690154 - gi\|53690154\|gb\|AAU89981.1\| small nuclear ribonucleoprotein polypeptide B [Homo sapiens]	164.0	[0..1]	[153..1]
RSMB_MOUSE - Small nuclear ribonucleoprotein-associated protein B OS=Mus musculus GN=Snrpb PE=1 SV=1 gi\|54035580 - gb\|AAH84002.1\| Unknown (protein for MGC:98150) [Xenopus laevis] gi\|146327314, gi... - gi\|147898161\|gb\|AAI40305.1\| Small nuclear ribonucleoprotein B [synthetic construct], gi\|146327314\|gb...	164.0	[0..1]	[153..1]

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Predicted Domain #1

Region A:
Residues: [1-160]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTISKNNKMM AHLNYRMKII LQDGRTFIGF FKAFDKHMNI LLAECEEHRQ IKPKAGKKTD  60
   61 GEEKRILGLV LVRGEHIVSM TVDGPPPRDD DSVRLAKAGG AGGVGQAKPG GRGMPAMPGM 120
  121 PGMPPGGAPG GLSGAMRGHG GPGMAAMQPG YGGPPGGRPF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.154902
Match:	1d3bB
Description:	B core SNRNP protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits