YRC Public Data Repository - Protein Structure Prediction

Protein:	sel-9
Organism:	Caenorhabditis elegans
Length:	203 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sel-9.

Description	E-value	Query Range	Subject Range
gi\|39590340, gi\|... - gi\|39590340\|emb\|CAE66079.1\| Hypothetical protein CBG11296 [Caenorhabditis briggsae], gi\|187030438\|em... gi\|157760004 - gi\|157760004\|ref\|XP_001672344.1\| Hypothetical protein CBG11296 [Caenorhabditis briggsae AF16]	229.0	[0..1]	[203..1]
gi\|109066641, gi... - gi\|109066643\|ref\|XP_001091631.1\| PREDICTED: similar to transmembrane emp24 protein transport domain ...	222.0	[0..1]	[203..12]
TMED7 - transmembrane emp24 protein transport domain containing 7 gi\|114601202, gi... - gi\|114601204\|ref\|XP_001147833.1\| PREDICTED: transmembrane emp24 protein transport domain containing ...	221.0	[0..13]	[201..31]
TMED7_RAT - Transmembrane emp24 domain-containing protein 7 OS=Rattus norvegicus GN=Tmed7 PE=1 SV=1	220.0	[0..13]	[201..33]
TMED4_MOUSE - Transmembrane emp24 domain-containing protein 4 OS=Mus musculus GN=Tmed4 PE=1 SV=1	217.0	[0..1]	[203..12]
gi\|47228487 - gi\|47228487\|emb\|CAG05307.1\| unnamed protein product [Tetraodon nigroviridis]	217.0	[0..3]	[199..5]
gi\|73970483 - gi\|73970483\|ref\|XP_858610.1\| PREDICTED: similar to transmembrane emp24 protein transport domain cont...	217.0	[0..17]	[201..37]

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Predicted Domain #1

Region A:
Residues: [1-123]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSLTWILAV LFVTPAASYF IHVDANEEQC FFDRLTSGTK MGLMFEVAEG GFLDIDVKIT  60
   61 GPDNKEIYKG ERESSGKFTF AAHMDGVYTY CFGNKMSTMT PKAVMFTVEI TEPHQQAPGA 120
  121 AAN

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.03
Match:	2yrlA
Description:	No description for 2yrlA was found.

Predicted Domain #2

Region A:
Residues: [124-203]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QDAADNAKLE EMVRELSSAL MSVKHEQEYM EVRERVHRNI NENTNSRVVM WAAFEAFVLV  60
   61 GMTVGQIFYL KRFFEVRTMV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits