YRC Public Data Repository - Protein Structure Prediction

Protein:	CE14418
Organism:	Caenorhabditis elegans
Length:	141 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE14418.

Description	E-value	Query Range	Subject Range
gi\|157746161 - gi\|157746161\|ref\|XP_001668177.1\| Hypothetical protein CBG04048 [Caenorhabditis briggsae AF16] gi\|39595402, gi\|... - gi\|39595402\|emb\|CAE60440.1\| Hypothetical protein CBG04048 [Caenorhabditis briggsae], gi\|187036234\|em...	156.0	[0..1]	[141..1]
gi\|1613840 - gi\|1613840\|gb\|AAB16807.1\| cytochrome b5 [Mesocricetus auratus]	137.0	[0..2]	[139..7]
gi\|68438685 - gi\|68438685\|ref\|XP_698851.1\| PREDICTED: similar to cytochrome b5 [Danio rerio]	137.0	[0..2]	[140..9]
gi\|703083 - gi\|703083\|gb\|AAA63169.1\| cytochrome b5 [Homo sapiens]	136.0	[0..2]	[139..7]
gi\|109122478 - gi\|109122478\|ref\|XP_001083378.1\| PREDICTED: similar to Cytochrome b5 [Macaca mulatta]	136.0	[0..2]	[139..7]
CYB5_MUSDO - Cytochrome b5 OS=Musca domestica GN=Cyt-b5 PE=1 SV=1	136.0	[0..2]	[140..4]

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Predicted Domain #1

Region A:
Residues: [1-141]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSELRVISLD EVSKHNWEDA DQSCWIVISG KVYDVTKFLN EHPGGEEVIT QLAGKDATVG  60
   61 FLDVGHSKDA IEMANEYLIG QLPESDVPKV ETAAAKPSKN EKSSSLLNDF TEIMTSPTWT 120
  121 NFLIPTTMGL VIYAVYKCMF N

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.69897
Match:	2i96A
Description:	No description for 2i96A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits