YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CE14349
Organism: Caenorhabditis elegans
Length: 333 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE14349.

Description E-value Query
Range
Subject
Range
gi|187024206, gi... - gi|39594288|emb|CAE71866.1| Hypothetical protein CBG18914 [Caenorhabditis briggsae], gi|187024206|em...
gi|157763968 - gi|157763968|ref|XP_001674327.1| Hypothetical protein CBG18914 [Caenorhabditis briggsae AF16]
392.0 [0..91] [333..21]

Back

Predicted Domain #1
Region A:
Residues: [1-168]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKHKILFKIN RFDFIATFYV VFLTSEEFSV RNFSKNLPES KSLKITSLTI VFWFPSAKGH  60
   61 LVNLINIQFF PFYSNPPKFC FEFSLLCAQE MIQLLLVGIT VVGSQHMTLC DYYEKLVLRS 120
  121 IIFFLGIAKS ECGHIIKPQK DIGFFNPPSY DTPNNFRFNS YNPSSNNV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [169-254]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NPQFNVFRSY SNDLVGSLPL CRNYFHSCMT STSCESGTIC TNGLEQGSCC TNPSQASCPS  60
   61 VTSMNINCRK LRSVNWCNND FDCRGG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [255-333]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 STTASMCCPT GCNYNMCVHV GAQVYHPRRS VVFKSLSTAA TTPDQCPDPY QLGVKCVAAR  60
   61 GSNWCYTDSD CRSGLYTRK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle