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View Structure Prediction Details

Protein: CE14339
Organism: Caenorhabditis elegans
Length: 485 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE14339.

Description E-value Query
Range
Subject
Range
gi|46107656, gi|... - gi|46107656|ref|XP_380887.1| hypothetical protein FG00711.1 [Gibberella zeae PH-1], gi|42547814|gb|E...
244.0 [0..3] [441..1417]

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Predicted Domain #1
Region A:
Residues: [1-485]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDSVGPSVD KKKEAEMSAG RILNEKQTDW KSMWICIFLQ FIVGVQISVY YMSMWPYLSG  60
   61 LDKTADVDFL GWIVAACSIG CTISNPIYGF WNQKTMSVKW PAITGFLIAA VGQVWYGLLT 120
  121 VATNVKWLML FARFFTGLGV GNIAALRVYA ATASTPKDRM RAISFGTGGF VLGISFGPVI 180
  181 SAVFTPLGAY GISIGPIVFN MFTVVAYLMA LICFLSCVVI YFLFEESYAG IVTKEEKAND 240
  241 DLVVPMFDIP SAIICIYLFM IVNIIATNVE VMSTPLTTVL YDWKDSDSIL YNGITLALSC 300
  301 IISVIFHVLL GASRIGKIDK RNQMLIGIFV FLLYQAFMYP WGFYSGPLNF LPPGVETTEV 360
  361 GGCLVEYHWC QETTRVPLSV YLFCFIVFFG VAFPFVETPS AALYSEVLGP RKQGTMQGFF 420
  421 SLGGSIAPVI ASISSTAIFK YTGYRYVIVL QSVFLLVGAA LILIFYKRLV PLKVIKKSED 480
  481 EKISN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 21.522879
Match: 1pw4A
Description: Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle