YRC Public Data Repository - Protein Structure Prediction

Protein:	CE14303
Organism:	Caenorhabditis elegans
Length:	122 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE14303.

Description	E-value	Query Range	Subject Range
gi\|89158835, gi\|... - gi\|89211558\|ref\|ZP_01189917.1\| thiol:disulfide interchange protein (thioredoxin) [Halothermothrix or...	122.0	[0..2]	[119..52]
gi\|55773110, gi\|... - gi\|55981697\|ref\|YP_144994.1\| hypothetical protein TTHA1728 [Thermus thermophilus HB8], gi\|55773110\|d...	119.0	[0..4]	[120..55]
gi\|56420614, gi\|... - gi\|56420614\|ref\|YP_147932.1\| thiol:disulfide interchange protein (thioredoxin) [Geobacillus kaustoph...	119.0	[0..2]	[118..53]
gi\|51893690, gi\|... - gi\|51893690\|ref\|YP_076381.1\| thiol-disulfide isomerase and thioredoxins [Symbiobacterium thermophilu...	116.0	[0..1]	[119..78]
gi\|82725915, gi\|... - gi\|82746114\|ref\|ZP_00908622.1\| thiol-disulfide isomerase and thioredoxins [Clostridium beijerincki N...	116.0	[0..2]	[119..69]
gi\|115369154, gi... - gi\|115373888\|ref\|ZP_01461180.1\| periplasmic protein thiol:disulfide oxidoreductase DsbE [Stigmatella...	114.0	[0..3]	[120..53]
gi\|42782682, gi\|... - gi\|42782682\|ref\|NP_979929.1\| ahpC/TSA family protein [Bacillus cereus ATCC 10987], gi\|42738608\|gb\|AA...	114.0	[0..2]	[119..64]
gi\|119634114, gi... - gi\|90573252\|ref\|ZP_01229768.1\| hypothetical protein CdifQ_02003277 [Clostridium difficile QCD-32g58]... gi\|255518355 - gi\|255518355\|ref\|ZP_05386031.1\| putative cytochrome C biogenesis protein [Clostridium difficile QCD-... gi\|255651473 - gi\|255651473\|ref\|ZP_05398375.1\| putative cytochrome C biogenesis protein [Clostridium difficile QCD-... gi\|254976558 - gi\|254976558\|ref\|ZP_05273030.1\| putative cytochrome C biogenesis protein [Clostridium difficile QCD-... gi\|255093942 - gi\|255093942\|ref\|ZP_05323420.1\| putative cytochrome C biogenesis protein [Clostridium difficile CIP ... gi\|255315694 - gi\|255315694\|ref\|ZP_05357277.1\| putative cytochrome C biogenesis protein [Clostridium difficile QCD-...	113.0	[0..4]	[117..295]
gi\|77954187, gi\|... - gi\|77954187\|ref\|ZP_00818586.1\| thiol:disulfide interchange protein DsbE, putative [Marinobacter aqua...	113.0	[0..4]	[116..40]
gi\|254759241 - gi\|254759241\|ref\|ZP_05211267.1\| ahpC/TSA family protein [Bacillus anthracis str. Australia 94] gi\|254752969 - gi\|254752969\|ref\|ZP_05205005.1\| ahpC/TSA family protein [Bacillus anthracis str. Vollum] gi\|254744790 - gi\|254744790\|ref\|ZP_05202468.1\| ahpC/TSA family protein [Bacillus anthracis str. Kruger B] gi\|195993164, gi... - gi\|196034090\|ref\|ZP_03101500.1\| ahpC/TSA family protein [Bacillus cereus W], gi\|195993164\|gb\|EDX5712... gi\|254738652 - gi\|254738652\|ref\|ZP_05196355.1\| ahpC/TSA family protein [Bacillus anthracis str. Western North Ameri... gi\|218538154, gi... - gi\|218904740\|ref\|YP_002452574.1\| ahpC/TSA family protein [Bacillus cereus AH820], gi\|218538154\|gb\|AC... gi\|254726055 - gi\|254726055\|ref\|ZP_05187837.1\| ahpC/TSA family protein [Bacillus anthracis str. A1055] gi\|254686179 - gi\|254686179\|ref\|ZP_05150038.1\| ahpC/TSA family protein [Bacillus anthracis str. CNEVA-9066] gi\|229603030, gi... - gi\|229603030\|ref\|YP_002867804.1\| ahpC/TSA family protein [Bacillus anthracis str. A0248], gi\|2292674... gi\|228660422, gi... - gi\|229123128\|ref\|ZP_04252335.1\| AhpC/TSA [Bacillus cereus 95/8201], gi\|228660422\|gb\|EEL16055.1\| AhpC... gi\|228947226, gi... - gi\|228947226\|ref\|ZP_04109520.1\| AhpC/TSA [Bacillus thuringiensis serovar monterrey BGSC 4AJ1], gi\|22... gi\|228928663, gi... - gi\|228928663\|ref\|ZP_04091699.1\| AhpC/TSA [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1],... gi\|227006047, gi... - gi\|227813556\|ref\|YP_002813565.1\| ahpC/TSA family protein [Bacillus anthracis str. CDC 684], gi\|22700... gi\|49330522, gi\|... - gi\|49478966\|ref\|YP_037689.1\| AhpC/TSA family protein [Bacillus thuringiensis serovar konkukian str. ... gi\|164713266, gi... - gi\|165871055\|ref\|ZP_02215706.1\| ahpC/TSA family protein [Bacillus anthracis str. A0488], gi\|16471326... gi\|49186409, gi\|... - gi\|49186409\|ref\|YP_029661.1\| ahpC/TSA family protein [Bacillus anthracis str. Sterne], gi\|49180336\|g... gi\|167636457, gi... - gi\|167636457\|ref\|ZP_02394755.1\| ahpC/TSA family protein [Bacillus anthracis str. A0442], gi\|16752811... gi\|47504107, gi\|... - gi\|47528959\|ref\|YP_020308.1\| ahpC/TSA family protein [Bacillus anthracis str. 'Ames Ancestor'], gi\|4... gi\|167640617, gi... - gi\|167640617\|ref\|ZP_02398879.1\| ahpC/TSA family protein [Bacillus anthracis str. A0193], gi\|16751148... gi\|170688419, gi... - gi\|170688419\|ref\|ZP_02879627.1\| ahpC/TSA family protein [Bacillus anthracis str. A0465], gi\|17066758... gi\|170708157, gi... - gi\|170708157\|ref\|ZP_02898604.1\| ahpC/TSA family protein [Bacillus anthracis str. A0389], gi\|17012696... gi\|177652491, gi... - gi\|177652491\|ref\|ZP_02934958.1\| ahpC/TSA family protein [Bacillus anthracis str. A0174], gi\|17208216... gi\|190564522, gi... - gi\|190564522\|ref\|ZP_03017443.1\| ahpC/TSA family protein [Bacillus anthracis Tsiankovskii-I], gi\|1905... gi\|30263560, gi\|... - gi\|30263560\|ref\|NP_845937.1\| ahpC/TSA family protein [Bacillus anthracis str. Ames], gi\|30258195\|gb\|... gi\|65320889, gi\|... - gi\|65320889\|ref\|ZP_00393848.1\| COG0526: Thiol-disulfide isomerase and thioredoxins [Bacillus anthrac...	113.0	[0..2]	[119..64]

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Predicted Domain #1

Region A:
Residues: [1-122]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLDWTLVDAT EALAGKIGGF YFSAHWCPPC CMFTPILKKF YEKVYDDFEI VFVSSDPSES  60
   61 GLKKYMQECH GDWYYIPFGH EAKQKLCVKY EITGMPTLVI VKPDGTEVKS DGRYDVQMET 120
  121 NP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	14.39794
Match:	1okdA
Description:	NMR-structure of tryparedoxin 1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.142133664747919	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: