YRC Public Data Repository - Protein Structure Prediction

Protein:	ant-1.1
Organism:	Caenorhabditis elegans
Length:	300 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ant-1.1.

Description	E-value	Query Range	Subject Range
gi\|74006830 - gi\|74006830\|ref\|XP_537947.2\| PREDICTED: similar to ADP/ATP translocase 3 (Adenine nucleotide translo...	306.0	[0..8]	[300..176]
gi\|114597246 - gi\|114597246\|ref\|XP_517556.2\| PREDICTED: solute carrier family 25 (mitochondrial carrier; adenine nu...	300.0	[0..13]	[299..211]
gi\|109075608 - gi\|109075608\|ref\|XP_001105062.1\| PREDICTED: similar to solute carrier family 25 (mitochondrial carri...	298.0	[0..2]	[299..10]
ADT4_MOUSE - ADP/ATP translocase 4 OS=Mus musculus GN=Slc25a31 PE=1 SV=1	298.0	[0..7]	[300..16]
gi\|68366574 - gi\|68366574\|ref\|XP_694733.1\| PREDICTED: similar to ADP,ATP carrier protein 2 (ADP/ATP translocase 2)...	297.0	[0..11]	[300..21]
gi\|157776554 - gi\|157776554\|ref\|XP_001666343.1\| hypothetical protein CBG21201 [Caenorhabditis briggsae AF16] gi\|39586563, gi\|... - gi\|39586563\|emb\|CAE73690.1\| Hypothetical protein CBG21201 [Caenorhabditis briggsae], gi\|187022781\|em...	297.0	[0..1]	[300..1]
ADT4_BOVIN - ADP/ATP translocase 4 OS=Bos taurus GN=SLC25A31 PE=2 SV=1	297.0	[0..1]	[300..1]
gi\|47227215 - gi\|47227215\|emb\|CAG00577.1\| unnamed protein product [Tetraodon nigroviridis]	296.0	[0..6]	[300..4]

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Predicted Domain #1

Region A:
Residues: [1-300]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKEKSFDTK KFLIDLASGG TAAAVSKTAV APIERVKLLL QVQDASKAIA VDKRYKGIMD  60
   61 VLIRVPKEQG VAALWRGNLA NVIRYFPTQA MNFAFKDTYK AIFLEGLDKK KDFWKFFAGN 120
  121 LASGGAAGAT SLCFVYPLDF ARTRLAADIG KANDREFKGL ADCLIKIVKS DGPIGLYRGF 180
  181 FVSVQGIIIY RAAYFGMFDT AKMVFASDGQ KLNFFAAWGI AQVVTVGSGI LSYPWDTVRR 240
  241 RMMMQSGRKD ILYKNTLDCA KKIIQNEGMS AMFKGALSNV FRGTGGALVL AIYDEIQKFL 300
  301

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	79.30103
Match:	1okcA
Description:	structure of mitochondrial ADP/ATP carrier in complex with carboxyatractyloside
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits