YRC Public Data Repository - Protein Structure Prediction

Protein:	hsp-16.11
Organism:	Caenorhabditis elegans
Length:	145 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for hsp-16.11.

Description	E-value	Query Range	Subject Range
gi\|156334 - gi\|156334\|gb\|AAA28066.1\| heat shock protein 16-1 [Caenorhabditis elegans]	138.0	[0..1]	[145..1]
gi\|8671873 - gi\|8671873\|gb\|AAF78436.1\|AC018748_15 Contains similarity to 17.6 KD class I heat shock protein from ...	136.0	[0..1]	[138..247]
gi\|157765124 - gi\|157765124\|ref\|XP_001674905.1\| Hypothetical protein CBG04608 [Caenorhabditis briggsae AF16] gi\|39589895, gi\|... - gi\|39589895\|emb\|CAE60893.1\| Hypothetical protein CBG04608 [Caenorhabditis briggsae], gi\|187035397\|em...	131.0	[0..1]	[144..1]
gi\|224545 - gi\|224545\|prf\|\|1107298A protein,small heat shock	129.0	[0..1]	[138..1]
gi\|87240494 - gi\|87240494\|gb\|ABD32352.1\| Heat shock protein Hsp20 [Medicago truncatula]	127.0	[0..1]	[138..1]
gi\|38639431 - gi\|38639431\|gb\|AAR25848.1\| 17.5 kDa class I heat shock protein [Carica papaya]	126.0	[0..1]	[138..1]

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Predicted Domain #1

Region A:
Residues: [1-145]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLYHYFRPA QRSVFGDLMR DMAQMERQFT PVCRGSPSES SEIVNNDQKF AINLNVSQFK  60
   61 PEDLKINLDG HTLSIQGEQE LKTEHGYSKK SFSRVILLPE DVDVGAVASN LSEDGKLSIE 120
  121 APKKEAIQGR SIPIQQAPVE QKTSE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.522879
Match:	1gmeA
Description:	Small heat shock protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.636329168399534	bayes_pls_golite062009
protein binding	0.0247851905266481	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: