| Protein: | CE14036 |
| Organism: | Caenorhabditis elegans |
| Length: | 670 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE14036.
| Description | E-value | Query Range |
Subject Range |
|
|
929.0 | [0..1] | [668..1] |
|
Region A: Residues: [1-292] |
1 11 21 31 41 51
| | | | | |
1 MAHQPCSSSS FSNDSGSDYI VNLNVGGRIF ATSCNTLTWI PDSFFTSLLS GRMNSVKDPS 60
61 GAIFIDRDPD LFRVILNYLR TKQVDLCGIK VDTLKHEALF FGLTPLIRRL TLCEELSSTS 120
121 CGSVYFCGMI PPPDMPLENL PNEKSRSPMY SNSSETSTNN SKNKSNGSPR HRGHSKKQST 180
181 DMSRYIKNEL SELAKSKSQP DRDTDPMKVR MIRAHICSIV VAYSYFVCVY RVTEWNTYVL 240
241 LWKSPRARTY VSHIAVNTKI AATVAERLVA VSFQDDTIGL WHIDDEGKTE KK
|
| Detection Method: |  |
| Confidence: | 51.39794 |
| Match: | 2a79B |
| Description: | Mammalian Shaker Kv1.2 potassium channel- beta subunit complex |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [293-507] |
1 11 21 31 41 51
| | | | | |
1 GLFSMNVSID NLFFVGTQMV ALSKSGKVGI WHSATQNWQA QDVQPISCYD TAGSSLILGC 60
61 ANGSMNHIDM QKFPLRMKDN DLLVTELFRD PNGETITSLS VFLTPKTSAC GNWIEIAYGT 120
121 SNGVVNLILQ HPETAGHQPV LFQSYNIHNS PVQRVSLNTS HLISVCSEYN HVRSWNVTRF 180
181 RGMINTQPGT VPLASFKVLT LDSIDETTDR QYNHP
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [508-670] |
1 11 21 31 41 51
| | | | | |
1 GPYGDQDSEQ VLIQRLIPNA QKLFVRLAST GERICTVDSV EDSPITAFCV HELDGQKLGS 60
61 RLRKYLFCGN GNGSVQVWDL TSALDQFHLK NGSHPQQQQV NPPAAANQSE LIKPQLAQSP 120
121 RSLINLSNYS GGPTPQELLD VIDDNDICCS TPSLSRCPSA AFQ
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
