YRC Public Data Repository - Protein Structure Prediction

Protein:	CE14030
Organism:	Caenorhabditis elegans
Length:	264 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE14030.

Description	E-value	Query Range	Subject Range
gi\|53688528 - gi\|53688528\|ref\|ZP_00110656.2\| COG0052: Ribosomal protein S2 [Nostoc punctiforme PCC 73102]	263.0	[0..65]	[258..51]
gi\|25294462 - pir\|\|AH2404 30S ribosomal protein S2 [imported] - Nostoc sp. (strain PCC 7120) RS2_NOSS1 - 30S ribosomal protein S2 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=rpsB PE=3 SV=1	260.0	[0..69]	[259..1]
RS2_SYNY3 - 30S ribosomal protein S2 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=rpsB PE=3 SV=1 gi\|7440111 - pir\|\|S75586 ribosomal protein S2 - Synechocystis sp. (strain PCC 6803) RS2_SYNY3 - 30S ribosomal protein S2 OS=Synechocystis sp. (strain ATCC 27184 / PCC 6803 / N-1) GN=rpsB PE=3 SV=1	260.0	[0..69]	[259..1]
RS2_ANAVT - 30S ribosomal protein S2 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rpsB PE=3 SV=1	260.0	[0..69]	[259..1]
RS2_PEDPA - 30S ribosomal protein S2 OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=rpsB PE=3 SV=1	259.0	[0..69]	[262..1]
RS2_LACJO - 30S ribosomal protein S2 OS=Lactobacillus johnsonii GN=rpsB PE=3 SV=1 RS2_LACJO - 30S ribosomal protein S2 OS=Lactobacillus johnsonii (strain CNCM I-12250 / La1 / NCC 533) GN=rpsB PE... gi\|227890237, gi... - gi\|227890237\|ref\|ZP_04008042.1\| 30S ribosomal protein S2 [Lactobacillus johnsonii ATCC 33200], gi\|22...	259.0	[0..69]	[264..1]
RS2_MOOTA - 30S ribosomal protein S2 OS=Moorella thermoacetica (strain ATCC 39073) GN=rpsB PE=3 SV=1	259.0	[0..69]	[263..1]
gi\|67922290, gi\|... - gi\|67922290\|ref\|ZP_00515803.1\| Ribosomal protein S2, bacterial and organelle form [Crocosphaera wats...	258.0	[0..69]	[259..1]
gi\|116629458, gi... - gi\|116629458\|ref\|YP_814630.1\| 30S ribosomal protein S2 [Lactobacillus gasseri ATCC 33323], gi\|116095...	258.0	[0..60]	[264..4]
RS2_CALS4 - 30S ribosomal protein S2 OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / J... RS2_THETN - 30S ribosomal protein S2 OS=Thermoanaerobacter tengcongensis GN=rpsB PE=3 SV=1	258.0	[0..69]	[264..1]

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Predicted Domain #1

Region A:
Residues: [1-264]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRVVAAAIR TERAFSTRFS ASQQKPVAST SSSSSVPDRA TLEKGTVQPT VLKPFVSASL  60
   61 QHEDLFNFEK MVHIDEMFKA RLHYGHKVGT VNNNMKWALY GERLGVCLFD LDITKKYLVR 120
  121 ALNFVAHVSL RGGMILFVTS NRDTMFDVEK AADEVGQYSH VRKWQSGTLT NTRQLLGASV 180
  181 RLPDAVCFLS TLTSLGENHP AIVEAAKMAI PTIGVVDSNS DPAYLTYLVP ANDDTPQSTE 240
  241 YLLRMFKEAV RKGQEERKRQ QQGK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	66.69897
Match:	1vs5B
Description:	No description for 1vs5B was found.

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	3.72077434941115	bayes_pls_golite062009
structural molecule activity	3.55434199522977	bayes_pls_golite062009
binding	0.259612068241334	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: