YRC Public Data Repository - Protein Structure Prediction

Protein:	CE14028
Organism:	Caenorhabditis elegans
Length:	299 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE14028.

Description	E-value	Query Range	Subject Range
gi\|187038160, gi... - gi\|39581608\|emb\|CAE58393.1\| Hypothetical protein CBG01522 [Caenorhabditis briggsae], gi\|187038160\|em... gi\|157760101 - gi\|157760101\|ref\|XP_001672393.1\| Hypothetical protein CBG01522 [Caenorhabditis briggsae AF16]	334.0	[0..1]	[299..1]
RL4_GEOSE - 50S ribosomal protein L4 OS=Geobacillus stearothermophilus GN=rplD PE=1 SV=1	272.0	[0..52]	[260..2]
RL4_GEOKA - 50S ribosomal protein L4 OS=Geobacillus kaustophilus (strain HTA426) GN=rplD PE=3 SV=1 gi\|220706749, gi... - gi\|221089323\|ref\|ZP_03558843.1\| ribosomal protein L4/L1e [Geobacillus sp. Y412MC61], gi\|220706749\|gb... RL4_GEOKA - 50S ribosomal protein L4 OS=Geobacillus kaustophilus GN=rplD PE=3 SV=1	271.0	[0..52]	[260..2]
MRPL4 - mitochondrial ribosomal protein L4	271.0	[0..12]	[279..22]
gi\|109484239, gi... - ref\|XP_343355.1\| similar to mitochondrial ribosomal protein L4 isoform a [Rattus norvegicus], gi\|157...	266.0	[0..12]	[279..22]
gi\|55715752 - gb\|AAH86149.1\| Unknown (protein for MGC:98570) [Xenopus laevis] RM04_MOUSE - 39S ribosomal protein L4, mitochondrial OS=Mus musculus GN=Mrpl4 PE=1 SV=1	265.0	[0..3]	[279..18]
gi\|21553676 - gi\|21553676\|gb\|AAM62769.1\| 50S ribosomal protein L4 [Arabidopsis thaliana]	263.0	[0..8]	[266..48]
RL4_BACSK - 50S ribosomal protein L4 OS=Bacillus clausii (strain KSM-K16) GN=rplD PE=3 SV=1	263.0	[0..52]	[260..2]
RL4_BACHD - 50S ribosomal protein L4 OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9... RL4_BACHD - 50S ribosomal protein L4 OS=Bacillus halodurans GN=rplD PE=3 SV=1	262.0	[0..52]	[260..2]

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Predicted Domain #1

Region A:
Residues: [1-299]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSRQLRFLI SSRAFSSAVQ DVSSTSSGES IDTRRELWRK PENPFIKTPQ AWVSNLDTIE  60
   61 DEKLGLVDLH PDIFRTSPRI DILHRNLTWQ SVYRNVQMTK MLTKAEMPGG GRKPWPQKKT 120
  121 GRAHVGSIRS PQFIRGGFAN GVRGPRTWFY MLPDAVRIQG LCVALTLKHT QDDLHIVDKI 180
  181 QNLQNGDPKY WIDLCEARNY GYSVLFVDDC DEISGGLAEA QQALPWLNVM PVYGLNCFSL 240
  241 MKYDTIVLSR SALERVEERL LTQMHRAGPM NKKYRYMDYK DKILQEAEAE EDPLMPPVV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	50.0
Match:	2ftcD
Description:	No description for 2ftcD was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits