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View Structure Prediction Details

Protein: CE13964
Organism: Caenorhabditis elegans
Length: 376 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE13964.

Description E-value Query
Range
Subject
Range
gi|114639179 - gi|114639179|ref|XP_001160145.1| PREDICTED: similar to deubiquitinating enzyme DUB1 [Pan troglodytes...
226.0 [0..16] [374..14]

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Predicted Domain #1
Region A:
Residues: [1-376]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVNEGWDSF KTNRWINFDT IPSSSSQNRP APRAPEIEVN RKTPDSPSNR ANRPRTLSDR  60
   61 GNEILDNHEL VSSLYAWNWS ELRENYPEKG IQNPSIYCYA ISCVQLLSHV PAIVRIINAK 120
  121 IQLVSAATGR KTSFKAMAML ELSIGRQEDA HDALLAILGK LDKISVQSNP RLKGRKVADD 180
  181 LFGYSIRNEV QCPGCKNKHV YYEHNTVMTV RMLRKDPSGK SHSIKELMQA LFTESKIFGY 240
  241 NCSKCKKKSD APVKPTLLRA PQILLMHISR FSFDGWGKKI SRPVTLNETL DVTSMATAGA 300
  301 STVYKLCGAV IHGGTTLDYG HYWCVARSRK REEQFVTLND SSVSQHTNPR DALQSYIVLY 360
  361 RRREHLANVG NEKSMI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 48.522879
Match: 2gfoA
Description: No description for 2gfoA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle