YRC Public Data Repository - Protein Structure Prediction

Protein:	hsp-12.1
Organism:	Caenorhabditis elegans
Length:	109 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for hsp-12.1.

Description	E-value	Query Range	Subject Range
gi\|15928913 - gi\|15928913\|gb\|AAH14920.1\|AAH14920 Unknown (protein for IMAGE:3906970) [Homo sapiens]	109.0	[0..3]	[107..50]
gi\|54696636, gi\|... - gi\|61365790\|gb\|AAX42764.1\| heat shock 27kDa protein 1 [synthetic construct], gi\|54696636\|gb\|AAV38690...	108.0	[0..3]	[107..64]
gi\|21592809 - gi\|21592809\|gb\|AAM64758.1\| heat shock protein, putative [Arabidopsis thaliana]	107.0	[0..4]	[109..20]
HS17A_ORYSJ - 17.9 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.9A PE=2 SV=1 HSP23_ORYSA - 17.4 kDa class I heat shock protein 3 - Oryza sativa (Rice) gi\|125543232 - gi\|125543232\|gb\|EAY89371.1\| hypothetical protein OsI_10878 [Oryza sativa Indica Group]	106.0	[0..10]	[108..41]
HSPB1_POELU - Heat shock protein beta-1 OS=Poeciliopsis lucida GN=hspb1 PE=2 SV=1	106.0	[0..1]	[107..69]

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Predicted Domain #1

Region A:
Residues: [1-109]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHTIPITTDS AASWDWPLQH NDGVVKVTNT SEKFEVGLDA GFFGPNDIDV KVNGIEIIIH  60
   61 LRHDNRPTEY GIVNREVHRT YKLPEDVDPS TVRSHLNSSG VLTITANKL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	15.522879
Match:	1gmeA
Description:	Small heat shock protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.899294246597615	bayes_pls_golite062009
protein binding	0.766194779819271	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: