YRC Public Data Repository - Protein Structure Prediction

Protein:	CE13792
Organism:	Caenorhabditis elegans
Length:	155 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE13792.

Description	E-value	Query Range	Subject Range
gi\|89158835, gi\|... - gi\|89211558\|ref\|ZP_01189917.1\| thiol:disulfide interchange protein (thioredoxin) [Halothermothrix or...	135.0	[0..13]	[155..39]
gi\|77954187, gi\|... - gi\|77954187\|ref\|ZP_00818586.1\| thiol:disulfide interchange protein DsbE, putative [Marinobacter aqua...	131.0	[0..2]	[154..8]
gi\|157751762 - gi\|157751762\|ref\|XP_001679593.1\| Hypothetical protein CBG02632 [Caenorhabditis briggsae AF16] gi\|39597070, gi\|... - gi\|39597070\|emb\|CAE59297.1\| Hypothetical protein CBG02632 [Caenorhabditis briggsae], gi\|187037252\|em...	130.0	[0..15]	[154..1]
gi\|110637852, gi... - gi\|110637852\|ref\|YP_678059.1\| thioredoxin family protein [Cytophaga hutchinsonii ATCC 33406], gi\|110...	130.0	[0..11]	[151..251]
gi\|7505193 - gi\|7505193\|pir\|\|T33313 hypothetical protein K02H11.6 - Caenorhabditis elegans	129.0	[0..12]	[152..196]
gi\|55773110, gi\|... - gi\|55981697\|ref\|YP_144994.1\| hypothetical protein TTHA1728 [Thermus thermophilus HB8], gi\|55773110\|d...	129.0	[0..2]	[154..17]
gi\|56420614, gi\|... - gi\|56420614\|ref\|YP_147932.1\| thiol:disulfide interchange protein (thioredoxin) [Geobacillus kaustoph...	129.0	[0..13]	[139..40]
gi\|82725915, gi\|... - gi\|82746114\|ref\|ZP_00908622.1\| thiol-disulfide isomerase and thioredoxins [Clostridium beijerincki N...	128.0	[0..11]	[142..54]
gi\|47575097 - gi\|47575097\|ref\|ZP_00245132.1\| COG0526: Thiol-disulfide isomerase and thioredoxins [Rubrivivax gelat... gi\|124266414, gi... - gi\|124266414\|ref\|YP_001020418.1\| peroxiredoxin-like protein [Methylibium petroleiphilum PM1], gi\|124...	128.0	[0..13]	[154..33]
gi\|160427559, gi... - gi\|160878893\|ref\|YP_001557861.1\| redoxin domain-containing protein [Clostridium phytofermentans ISDg...	128.0	[0..10]	[155..67]

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Predicted Domain #1

Region A:
Residues: [1-155]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFLFQLIYTF PEKNMDILAG MKLEKLDKSL VDATEALAGK LVGFYFSAHW CPPCRGFTPI  60
   61 LKDFYEEVNE EFEIVFVSSD RSESDLKMYM KECHGDWYHI PHGNGAKQKL STKYGVSGIP 120
  121 ALIIVKPDGT EITRDGRKDV QMGTNPKAII AKWKD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	14.09691
Match:	1o7uA
Description:	Tryparedoxin I
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits