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View Structure Prediction Details

Protein: fbxb-37
Organism: Caenorhabditis elegans
Length: 368 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for fbxb-37.

Description E-value Query
Range
Subject
Range
CE08553 - WBGene00016337 locus:fbxb-38 status:Partially_confirmed TR:O16577 protein_id:AAB66057.1
216.0 [0..1] [307..146]

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Predicted Domain #1
Region A:
Residues: [1-81]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDAVSFPILR LPQSALKNAL RQMCLMEHLF LSVLSTKAKQ HITMFNEVQQ DVSLIVRSSE  60
   61 FIFTLQSKKN YYDLHINFKL S

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [82-169]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NVKISKLFFP GHVFTTISVP EFTAKQWIDH IGSVFLKNAS LALLVQNPEK RMLEERYEYI  60
   61 EEFRIVNLEI HSAEIQDIPL YEMFPLLK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [170-280]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CLSFVNVPKS KSILIQNLEE LQFNVSKVTL NEIVLVNCST ITIDNQVISD KNLNLFIKHW  60
   61 IKGSNCQLKS FEYHIRPTER LRFVEVSLFE GIGYMEKEED DHWKRFEIKR N

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 26.39794
Match: PF07735.8
Description: No description for PF07735.8 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [281-368]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DGTKATVLLS KTDYISFVIS PGSHTPVRNE VEIGKVEVRT YIVSKDGIQT DPEKIKAVSK  60
   61 FPQPKNVMDV CLSIDDSSKT LWINYDLN

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.22
Match: 1rw3A
Description: The crystal structure of the monomeric reverse transcriptase from Moloney murine leukemia virus
Matching Structure (courtesy of the PDB):

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Created and Maintained by: Michael Riffle