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View Structure Prediction Details

Protein: col-141
Organism: Caenorhabditis elegans
Length: 314 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for col-141.

Description E-value Query
Range
Subject
Range
gi|113461768, gi... - gi|113461768|ref|YP_719837.1| large adhesin [Haemophilus somnus 129PT], gi|112823811|gb|ABI25900.1| ...
277.0 [0..45] [313..1515]

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Predicted Domain #1
Region A:
Residues: [1-314]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHTSSNTMST STFVSVASAI SGLAVLGCLF TVAMIFNDIN SFYDEKIEEL NEFKGLEQNA  60
   61 WRSMIPSTRP VNAESLLLGR NKRQAQCNCG AQSQGCPAGP PGPPGYPGAQ GEPGLPGIAG 120
  121 QPGSGARVNP QTGRDSFCIT CPAGPPGPAG TPGAPGAPGN AGAPGQDSFG GGPGPAGPTG 180
  181 PTGDAGAPGQ PGHPGSPGNP GRGGQRSRGL PGPSGRPGPQ GPAGGPGQPG QSGGSGTPGQ 240
  241 PGAPGAPGHP GQAGTPGTPG APGNSGAPGG DAAYCPCPAR SAAMAARKRV FKVARSRAAV 300
  301 AKRRVVKRVR VQKA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 30.0
Match: 1y0fA
Description: No description for 1y0fA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle