YRC Public Data Repository - Protein Structure Prediction

Protein:	msp-78
Organism:	Caenorhabditis elegans
Length:	127 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for msp-78.

Description	E-value	Query Range	Subject Range
gi\|157774319, gi... - gi\|157774319\|ref\|XP_001665225.1\| hypothetical protein CBG09953 [Caenorhabditis briggsae AF16], gi\|15... gi\|189313798, gi... - gi\|189313798\|gb\|ACD88898.1\| major sperm protein family member protein 56 [Caenorhabditis brenneri], ... gi\|187037417, gi... - gi\|39596905\|emb\|CAE59132.1\| Hypothetical protein CBG02432 [Caenorhabditis briggsae], gi\|39596792\|emb...	181.0	[0..1]	[127..1]
msp-3 - Major sperm protein status:Confirmed UniProt:Q19832 protein_id:AAK31504.1	180.0	[0..1]	[127..1]

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Predicted Domain #1

Region A:
Residues: [1-127]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQSVPPGDI QTQPGTKIVF NAPYDDKHTY HIKVINSSAR RIGYGIKTTN MKRLGVDPPC  60
   61 GVLDPKEAVL LAVSCDAFAF GQEDTNNDRI TIEWTNTPDG AAKQFRREWF QGDGMVRRKN 120
  121 LPIEYNP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	45.154902
Match:	1grwA
Description:	Major sperm protein, MSP
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.653234420802729	bayes_pls_golite062009
protein binding	0.170808849690486	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: