YRC Public Data Repository - Protein Structure Prediction

Protein:	CE13621
Organism:	Caenorhabditis elegans
Length:	124 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE13621.

Description	E-value	Query Range	Subject Range
gi\|73954359 - gi\|73954359\|ref\|XP_536425.2\| PREDICTED: similar to Activated RNA polymerase II transcriptional coact...	132.0	[0..10]	[121..211]
gi\|145018284, gi... - gi\|39974147\|ref\|XP_368464.1\| predicted protein [Magnaporthe grisea 70-15], gb\|EAA49122.1\| hypothetic...	109.0	[0..14]	[121..4]
gi\|114600763 - gi\|114600763\|ref\|XP_001154452.1\| PREDICTED: similar to SUB1 homolog (S. cerevisiae) isoform 2 [Pan t...	108.0	[0..10]	[121..46]
gi\|42570512 - gi\|42570512\|ref\|NP_850798.2\| transcriptional coactivator p15 (PC4) family protein [Arabidopsis thali...	107.0	[0..15]	[122..1]
gi\|42544337, gi\|... - gi\|46137341\|ref\|XP_390362.1\| hypothetical protein FG10186.1 [Gibberella zeae PH-1], gi\|42544337\|gb\|E...	106.0	[0..21]	[121..2]
gi\|44980980 - gi\|44980980\|gb\|AAS50863.1\| ABR093Cp [Ashbya gossypii ATCC 10895] gi\|44980980, gi\|... - gi\|45185322\|ref\|NP_983039.1\| ABR093Cp [Ashbya gossypii ATCC 10895], gi\|44980980\|gb\|AAS50863.1\| ABR09...	104.0	[0..44]	[122..32]
TCP4_NEUCR - Putative RNA polymerase II transcriptional coactivator OS=Neurospora crassa GN=80A10.210 PE=3 SV=1 TCP4_NEUCR - Putative RNA polymerase II transcriptional coactivator OS=Neurospora crassa (strain ATCC 24698 / 74-...	102.0	[0..25]	[121..2]
gi\|74226891 - gi\|74226891\|dbj\|BAE27090.1\| unnamed protein product [Mus musculus]	101.0	[0..10]	[121..20]

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Predicted Domain #1

Region A:
Residues: [1-124]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSSSSEDE LEKKVTKEQK KKETKSKKRQ SEAVEEEKQE VKKAKNEEEV SGRLKDSDGN  60
   61 EMFEIGNLRY ATVSKFKGKE YVNIREYYID RDSQKMMPSR KGISLSKAQW ANLKDLIPEI 120
  121 DKKF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.09691
Match:	1pcfA
Description:	Transcriptional coactivator PC4 C-terminal domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits