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View Structure Prediction Details

Protein: lips-12
Organism: Caenorhabditis elegans
Length: 277 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lips-12.

Description E-value Query
Range
Subject
Range
lips-7 - status:Confirmed UniProt:O76556 protein_id:AAC26254.1
217.0 [0..1] [276..1]
gi|187033636, gi... - gi|39586959|emb|CAE62894.1| Hypothetical protein CBG07082 [Caenorhabditis briggsae], gi|187033636|em...
gi|157753888 - gi|157753888|ref|XP_001680656.1| Hypothetical protein CBG07082 [Caenorhabditis briggsae AF16]
202.0 [0..4] [276..2]

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Predicted Domain #1
Region A:
Residues: [1-277]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTVFNSIVL VALATMVQAD FSEKFRDHFS NLPELLKDLS RKSQLGPAGS FGGGNHVGGA  60
   61 VTKKIPIIIV HGGGNSAGSF EKYRDHFIKQ GYSNETVYAT SWGFPTETIQ QSLEMKCEYV 120
  121 KRIRKLFFLV ASFTGGKVDI VAYGEGAPIA RKAVIGRNCV DTNQDTGNSL RNEVRAFVSV 180
  181 RGQNGGILCD PSGDKRATCL NMDIGLNCGS KFIKDINAIG KHWKEAVHSI HSIVPLLPQK 240
  241 TNCGSDSCGI PYSKVYEYDF NGVEQNVNRV VEILKKL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 29.154902
Match: 1va4A
Description: Pseudomonas fluorescens aryl esterase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.22413317508498 bayes_pls_golite062009
hydrolase activity 0.426147177494335 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle