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View Structure Prediction Details

Protein: lips-11
Organism: Caenorhabditis elegans
Length: 288 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lips-11.

Description E-value Query
Range
Subject
Range
lips-12 - status:Partially_confirmed UniProt:O17376 protein_id:AAB71290.1
226.0 [0..1] [288..1]
gi|39595997, gi|... - gi|39595997|emb|CAE67500.1| Hypothetical protein CBG13010 [Caenorhabditis briggsae], gi|187029026|em...
gi|157750606 - gi|157750606|ref|XP_001679015.1| Hypothetical protein CBG13010 [Caenorhabditis briggsae AF16]
224.0 [0..1] [285..1]

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Predicted Domain #1
Region A:
Residues: [1-288]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKILFNSIAL VVLATIVQAE FSDSFRNYFA GQPELLKVLS RNDLFGAIGS FGGGRHVGGT  60
   61 QTRRVPLIIV HGGGLSAQQY IKYKDEFIKR GYSAETVYAT SWGIPAHTYE PNLEMTCEYV 120
  121 KQIRKLIIAV SKFTNNRVNI VAYGTGSPIA RKAVIGGNCV DTNEDLGVPL TASVRAFVSV 180
  181 RDHSSSNSNS KFIFSGQNGG ILCDPSGDKR ATCLNMDIGL NCGSKFIRDI NAIDKRVALF 240
  241 HIDSIVPLLL QKTSCGSDPY TIPYSKVYEY DFNGVEQNVN RVVEILKK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 19.0
Match: 1a8sA
Description: CHLOROPEROXIDASE F/PROPIONATE COMPLEX
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.866238607554457 bayes_pls_golite062009
hydrolase activity 0.52702612560045 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle