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View Structure Prediction Details

Protein: CE13563
Organism: Caenorhabditis elegans
Length: 346 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE13563.

Description E-value Query
Range
Subject
Range
CE16768 - WBGene00015036 status:Partially_confirmed TR:O45066 protein_id:AAC02567.1
161.0 [0..13] [346..40]

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Predicted Domain #1
Region A:
Residues: [1-346]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRSWEEIFM ENCGSERLFL LSIASSVALV PLSSLFFSAS VAFYRKRKIF HPMFSFCFFS  60
   61 LLLLYYSSTT FLAIRNITFS FYGENYGKAP RIADHVVINC ERFYMAISYF IPPLIAIGII 120
  121 ERIFATAFSR FYEKSRYWMT LGYALVFACI LVYIEFANRH VMMATIPTRN IQVLFAIICS 180
  181 WSLILLLFIN RSKSKSGRAK SALSERYQVN ENLKALRIHI PVVCVDTGIQ IMFLCSDIFW 240
  241 NTAQVLNLNY CYDDNIYLHK FVVFRLIGFI LQYFIPFIIL HRFSQMCCNS LRRRPVRRSH 300
  301 PISPSPGTSP SSVVTIQNVF GMTLSGEANG PAGQEAHFKN LYAQWN

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.09
Match: 1f88A
Description: Rhodopsin
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle