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View Structure Prediction Details

Protein: CE13457
Organism: Caenorhabditis elegans
Length: 672 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE13457.

Description E-value Query
Range
Subject
Range
gi|187029173, gi... - gi|39595629|emb|CAE67131.1| Hypothetical protein CBG12553 [Caenorhabditis briggsae], gi|187029173|em...
gi|157747393 - gi|157747393|ref|XP_001668791.1| Hypothetical protein CBG12553 [Caenorhabditis briggsae AF16]
344.0 [0..11] [672..14]

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Predicted Domain #1
Region A:
Residues: [1-207]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRREPGRDV KRAAEEEFIE LERRTDTYED AVLNEDPQMK GFRFPSILSF PVPNKTIETG  60
   61 VTDENPFSAR KSAFFTNRLI GREESDSSSS REDSPLGSTE TGESCSTTDD EESKEKRIEY 120
  121 RDSQTQRCLG FCFRQLFFSR MWVFILQFIA SYYAGDRFRT DGFNLVDKLI EPGQSVFGDV 180
  181 VVRRGLMGLR RWDAQQFLFI AEHHYIF

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [208-425]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EHSLAFFAGF PETVNYVRVG VNNGMESVFG WTFPPWVTIT LAAVFVNLFC FLLCGMTLYQ  60
   61 VVLIMTRSVK ISLLAVSIFA FNPASIFFSS AYSESMFFTM TLTGFVFMLF GLRGKGFWHR 120
  121 MLKGFTGTIC FGLTFAVRSN GLLNFLYVAW IWCGTLLWDE EMPIPDCHKL ISTLAATKNE 180
  181 RYKQEWQAKF WRFQQKRKQN RKVFRWTDPN FSRCVTLF

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [426-672]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IVIVCAISAT LLFFTPYVFM TNFTADEFCK PQDSHKQAVE TIAKTVRLSP KTVSVKNAWE  60
   61 KTTWCKKPKL FGIIARYYGE IQTKYWSVKF FGYWKIKKIP CFLMMLPAAI LTVLAIKSSW 120
  121 NDVFLNKRWN NIWVLTARSD HSLPMAIHSS VLLFVAIFYI NSEVFTRIIF SSSPFIYIYI 180
  181 ATYIDKLTQG TIAGNRLWQY FESPGILPFF VFRRVWQDGW RGKLLYIYIL GYFVFGTMAH 240
  241 SAWLPFT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle