YRC Public Data Repository - Protein Structure Prediction

Protein:	pfd-3
Organism:	Caenorhabditis elegans
Length:	185 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pfd-3.

Description	E-value	Query Range	Subject Range
gi\|49074076, gi\|... - gi\|71018997\|ref\|XP_759729.1\| hypothetical protein UM03582.1 [Ustilago maydis 521], ref\|XP_401197.1\| ...	206.0	[0..2]	[172..12]
gi\|39973899, gi\|... - gi\|39973899\|ref\|XP_368340.1\| hypothetical protein MG00904.4 [Magnaporthe grisea 70-15], gb\|EAA49246....	187.0	[0..3]	[185..15]
gi\|57112889 - gi\|57112889\|ref\|XP_538210.1\| PREDICTED: similar to von Hippel-Lindau binding protein 1 isoform 1 [Ca...	184.0	[0..12]	[184..24]
gi\|151555331, gi... - gi\|151555331\|gb\|AAI48717.1\| Von Hippel-Lindau binding protein 1 [synthetic construct], gi\|146327729\|... PFD3_MOUSE - Prefoldin subunit 3 OS=Mus musculus GN=Vbp1 PE=1 SV=2	184.0	[0..12]	[184..23]
gi\|42551025, gi\|... - gi\|46123833\|ref\|XP_386470.1\| hypothetical protein FG06294.1 [Gibberella zeae PH-1], gi\|42551025\|gb\|E...	183.0	[0..2]	[182..11]
gi\|61366055, gi\|... - gi\|61366055\|gb\|AAX42807.1\| von Hippel-Lindau binding protein 1 [synthetic construct], gi\|61366049\|gb...	183.0	[0..12]	[184..24]
gi\|109132897 - gi\|109132897\|ref\|XP_001098746.1\| PREDICTED: similar to von Hippel-Lindau binding protein 1 isoform 4...	183.0	[0..12]	[184..24]
gi\|208968043, gi... - gi\|61356220\|gb\|AAX41221.1\| von Hippel-Lindau binding protein 1 [synthetic construct], gi\|208968043\|d... PFD3_PONPY - Prefoldin subunit 3 - Pongo pygmaeus (Orangutan) VBP1 - von Hippel-Lindau binding protein 1 PFD3_PONAB - Prefoldin subunit 3 OS=Pongo abelii GN=VBP1 PE=2 SV=1	183.0	[0..12]	[184..24]
gi\|147901313, gi... - gi\|32450618\|gb\|AAH54252.1\| Vbp1-prov protein [Xenopus laevis], gi\|147901313\|ref\|NP_001080849.1\| von ...	181.0	[0..12]	[184..19]

Back

Predicted Domain #1

Region A:
Residues: [1-185]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDTADSLSA RGIPKSELIE DVESWLTKEK LSIEEAEVVL REKYGKYKYV ESSMLAQKVR  60
   61 MSEKIPEFEN SLSIIDTLIA KRAADESFET TFLLSDDVYT KATVQKPEKV SIWLGANVMV 120
  121 EYDLENARKL LDKNRGSVQK VVDELTNELS YIKDQITTTE VNMSHIVNFG VNKRRAALAV 180
  181 NNGAK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.522879
Match:	1fxkC
Description:	Prefoldin alpha subunit
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits