YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CE13281
Organism: Caenorhabditis elegans
Length: 511 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE13281.

Description E-value Query
Range
Subject
Range
gi|157763982 - gi|157763982|ref|XP_001674334.1| Hypothetical protein CBG18928 [Caenorhabditis briggsae AF16]
gi|187024213, gi... - gi|39594295|emb|CAE71873.1| Hypothetical protein CBG18928 [Caenorhabditis briggsae], gi|187024213|em...
434.0 [0..32] [511..1]

Back

Predicted Domain #1
Region A:
Residues: [1-424]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEQRANKTS RCSISSVLFR AHSPLSSASA FNPCFVRSGL SASFPKSDSL CTLTDASFNP  60
   61 MQLLFLLLFT PYTIVGESPD FCPQHPVYGK EPEEDCAQAS DPNELPKSPL EKWFTKQMFE 120
  121 DLFPKSNIGM GPHPCLPYSY ESFIMAARYF PEFGAAHPNK QFKADEHHKR DVATFFAHAL 180
  181 QETGENDASV YNNTDLTLEQ AHECFYRGGF YNWFERGPNS TFLSPAAPGF SPFDGKRCTD 240
  241 EGRYCKSDPI IDFWYPCNSD IESHSDKEYH KGCYFGRGAL QLSWNYNYGL FQQFLLTKGV 300
  301 KVDLIENPNL VMTKMDPPLA MMASLWFYMT PQPPKPSMHQ IVTGDWKPSS KNRRAGYQGA 360
  361 IFGPTSLIIN NECGGEDPDE PGGPGESRRI KAFKWFCKYF KVPVGSERTL SCKGMLDGFD 420
  421 AVQH

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 76.69897
Match: 2dkvA
Description: No description for 2dkvA was found.

Predicted Domain #2
Region A:
Residues: [425-511]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYSWHPDWGN MWKSQSCDCA PAPYGGPLPY YDPKLYPHEF TKQNDRNRLR CVYSMYESPE  60
   61 TFRLDAGNSP CLKHKPKIRL TKTGIRG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle