YRC Public Data Repository - Protein Structure Prediction

Protein:	CE12912
Organism:	Caenorhabditis elegans
Length:	202 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE12912.

Description	E-value	Query Range	Subject Range
gi\|16943790 - gi\|16943790\|emb\|CAD10805.1\| SWI/SNF related, matrix associated, actin dependent regulator of chromat...	95.0	[0..1]	[197..630]
gi\|73990698 - gi\|73990698\|ref\|XP_534300.2\| PREDICTED: similar to SWI/SNF-related matrix-associated actin-dependent...	95.0	[0..1]	[197..727]
gi\|114589750, gi... - gi\|114589752\|ref\|XP_001138877.1\| PREDICTED: SWI/SNF-related matrix-associated actin-dependent regula...	95.0	[0..1]	[197..630]
gi\|76677957 - gi\|76677957\|ref\|XP_588490.2\| PREDICTED: similar to SWI/SNF-related matrix-associated actin-dependent...	94.0	[0..1]	[197..574]

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Predicted Domain #1

Region A:
Residues: [1-88]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRMMEAEIKD QRNNLQALKN SQRLSVRGSI QSNMSSRTDG ILQRRLDETE RKLAKTSAEL  60
   61 KAKDEKLKKE TASLEASREA HRLLQEES

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [89-202]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NKSKVSVMRL TFKLNRITHE SVKEQAVLKK KLLDCETRLA TYSECLVCYQ KFDENTRIPR  60
   61 VMDCGHTLCD FCINQIVKMA GCYSATCPFD RVRIFGFGKS RRLEDRPCNR FIMK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	6.39794
Match:	1rmdA
Description:	RAG1 DIMERIZATION DOMAIN
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.0938889867773109	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: