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View Structure Prediction Details

Protein: CE40635
Organism: Caenorhabditis elegans
Length: 739 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE40635.

Description E-value Query
Range
Subject
Range
gi|114588542 - gi|114588542|ref|XP_001158341.1| PREDICTED: SID1 transmembrane family, member 1 isoform 1 [Pan trogl...
818.0 [0..13] [739..40]

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Predicted Domain #1
Region A:
Residues: [1-145]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTFLLVLQIL LFLSLDKCQD FQEIELGINN VNLTTEGNLI ANLYQVILNS TNEPPAIRVS  60
   61 VDSLAATIKY PFTMTVVRGK TVHNVALPRI QSHQGKEFQY WFASDTLCDE DRSAEQLSQP 120
  121 VQISIASSLP SLFNLRVKSV NNFII

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [146-302]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GNKTFKSKGS PSEPRYYMYT FPDDVDKVDI RVTSPSEICG KIVARRVNCP LFDASGLLEQ  60
   61 SETFFYQSFT TFAGFSLKKS VIGRQFHLAF TVHPDETLCG TPDNFFDIPN NPARIKLAVI 120
  121 SVTPVKDNLW LPLFPILLYS ISMSTVIMLT YLKYKWL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [303-487]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DRRENNEPNI LDGTDSEGNV LVDKIWLFDK PSMIVSHKEY QKLKLVKDSK YFNFLFFQIF  60
   61 GSILPSLTTL FDKQKTSNNL NFCYLNFLCS LEFLCFKSFN SMTSASSLAV IGVLNLIIVF 120
  121 REKIFSFKIP RLPTTHGLQQ RDAPKVVCFL GLVSMGILWT ITNNCPHRTT IHLDMYTSSW 180
  181 IFYAA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [488-589]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FMWIYSKRHG VRKWQQFFII AVSSIYGCLT LAENMFNVNS VSRWVVKILF SLTAISSTVY  60
   61 FCYQYFYERP SGLQGNQWIT PPFESPQLYL SDANGIYNPL RS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [590-739]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KVVLIVLLIC LSVVCAILPL LTSESASNSA IICLGRGQIG IYLVYYAVQK CRFERQSFTL  60
   61 FYKICCTLIF IVFMLMECLN RYLANFMLTY NVLLTPAKSR QLNMDCVLPG IDLNDLRHYS 120
  121 CAVDCFLFIC LMDFIDSNIK DVPKKHIFVF 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


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