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View Structure Prediction Details

Protein: CE12390
Organism: Caenorhabditis elegans
Length: 527 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE12390.

Description E-value Query
Range
Subject
Range
gi|187034431, gi... - gi|39593813|emb|CAE62106.1| Hypothetical protein CBG06141 [Caenorhabditis briggsae], gi|187034431|em...
gi|157755769 - gi|157755769|ref|XP_001670228.1| Hypothetical protein CBG06141 [Caenorhabditis briggsae AF16]
301.0 [0..1] [527..1]

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Predicted Domain #1
Region A:
Residues: [1-78]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKIVLLSQI VRPALSSARF VHTSTPLSWQ KFENERHFEP GEDVMKRVWH GLSYDFRRWK  60
   61 RRFQEARKDA FKRRHPIA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 13.0
Match: 2qy6A
Description: No description for 2qy6A was found.

Predicted Domain #2
Region A:
Residues: [79-527]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HMKHGTLDNE VFPYRAEIVI IGGGLSGSST AFWLKERFRD EDFKVVVVEN NDVFTKSSTM  60
   61 LSTGGITQQF SIPEFVDMSL FTTEFLRHAG EHLRILDSEQ PDINFFPTGY LRLAKTDEEV 120
  121 EMMRSAWKVQ IERGAKVQLL SKDELTKRYP YMNVDDVLLA SLGVENEGTI DTWQLLSAIR 180
  181 EKNITLGVQY VKGEVEGFQF ERHRASSEVH AFGDDATADE NKLRAQRISG VLVRPQMNDA 240
  241 SARPIRAHLI VNAAGPWAGQ VAKMAGIGKG TGLLAVPVPI QPRKRDVFVI FAPDVPSDLP 300
  301 FIIDPSTGVF CRQTDSGQTF LVGRTPSKEE DAKRDHSNLD VDYDDFYQKI WPVLVDRVPG 360
  361 FQTAKVKSAW SGYQDINTFD DAPVIGEHPL YTNLHMMCGF GERGVMHSMA AARAYAERIF 420
  421 DGAYINVNLR KFDMRRIVKM DPITEPCRL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 56.69897
Match: 2gagB
Description: No description for 2gagB was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle