YRC Public Data Repository - Protein Structure Prediction

Protein:	gfl-1
Organism:	Caenorhabditis elegans
Length:	211 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gfl-1.

Description	E-value	Query Range	Subject Range
gi\|157755771 - gi\|157755771\|ref\|XP_001670229.1\| Hypothetical protein CBG06140 [Caenorhabditis briggsae AF16] gi\|187034432, gi... - gi\|39593812\|emb\|CAE62105.1\| Hypothetical protein CBG06140 [Caenorhabditis briggsae], gi\|187034432\|em...	273.0	[0..1]	[211..1]
gi\|118790591, gi... - gi\|118790591\|ref\|XP_318687.3\| ENSANGP00000022234 [Anopheles gambiae str. PEST], gi\|116118019\|gb\|EAA1...	261.0	[0..3]	[211..8]
gi\|157132764, gi... - gi\|157132764\|ref\|XP_001662633.1\| YEATS domain containing protein 4 [Aedes aegypti], gi\|108871078\|gb\|...	258.0	[0..3]	[211..10]
gi\|48106789 - gi\|48106789\|ref\|XP_396159.1\| PREDICTED: similar to YEATS domain containing 4 [Apis mellifera]	251.0	[0..3]	[210..10]
gi\|9755857 - gi\|9755857\|emb\|CAC01935.1\| NuBI-1 protein [Homo sapiens]	250.0	[0..3]	[211..7]
ENSOCUP000000099... - pep:novel chromosome:oryCun2:4:48350422:48426536:1 gene:ENSOCUG00000011552 transcript:ENSOCUT0000001... YETS4_MOUSE - YEATS domain-containing protein 4 OS=Mus musculus GN=Yeats4 PE=2 SV=1	248.0	[0..3]	[211..11]
gi\|76682080 - gi\|76682080\|ref\|XP_872200.1\| PREDICTED: similar to YEATS domain containing 4 [Bos taurus] gi\|73968736 - gi\|73968736\|ref\|XP_531673.2\| PREDICTED: similar to YEATS domain containing 4 [Canis familiaris]	247.0	[0..3]	[211..7]
gi\|115496730, gi... - gi\|81674278\|gb\|AAI09627.1\| YEATS domain containing 4 [Bos taurus], gi\|115496730\|ref\|NP_001069833.1\| ... gi\|238814999, gi... - gi\|251823926\|ref\|NP_001156531.1\| YEATS domain containing 4 [Ovis aries], gi\|238814999\|gb\|ACR56696.1\|...	247.0	[0..3]	[211..11]

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Predicted Domain #1

Region A:
Residues: [1-149]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEIVERMKK KNIVKPIVYG NTATPFGYKR DSDQHTHQWT VFLKPYLIED PTKWIRKVQF  60
   61 KLHESYAVPY RVVEKPPYEV TETGWGEFEI QIRIYFVDPN EKPITAFHYL RLFQPTIELP 120
  121 SGNQIVCMEF YDEIIFQEPT VQMYKALQA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	61.004365
Match:	PF03366.3
Description:	No description for PF03366.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [150-211]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SDGKRPDKQA FLNDIEQVKT RTRELGEVAQ KEIAAEIEDL RESLKDAHKM IVKYNTELAE  60
   61 QE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits