YRC Public Data Repository - Protein Structure Prediction

Protein:	cey-3
Organism:	Caenorhabditis elegans
Length:	265 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cey-3.

Description	E-value	Query Range	Subject Range
cey-2 - status:Confirmed UniProt:P91306 protein_id:AAK21380.1	257.0	[0..1]	[265..1]
gi\|39580797, gi\|... - gi\|39580797\|emb\|CAE58966.1\| Hypothetical protein CBG02238 [Caenorhabditis briggsae], gi\|187037584\|em... gi\|157746797 - gi\|157746797\|ref\|XP_001668494.1\| Hypothetical protein CBG02238 [Caenorhabditis briggsae AF16]	249.0	[0..1]	[265..1]
gi\|73976711 - gi\|73976711\|ref\|XP_848660.1\| PREDICTED: similar to nuclease sensitive element binding protein 1 [Can...	185.0	[0..1]	[229..110]
gi\|114576312 - gi\|114576312\|ref\|XP_001136258.1\| PREDICTED: similar to DNA-binding protein B [Pan troglodytes]	180.0	[0..1]	[229..51]
gi\|47939143, gi\|... - gi\|47939143\|gb\|AAH72014.1\| YBX1 protein [Homo sapiens], gi\|33875177\|gb\|AAH00064.1\| YBX1 protein [Hom...	180.0	[0..1]	[229..1]

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Predicted Domain #1

Region A:
Residues: [1-135]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDTANTAVE VDEQVIEKKL DDLSIGKKRS PSKDDTSKHR LPAAERIRIW EEEQKAKIVL  60
   61 TAGLQGKVKW YSVLRRYGFI SRSDGEKDVF VHQTAISKSD TEKFYLRTLA DEEEVLFDLV 120
  121 DGKNGPEAAN VTGPA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.0
Match:	1h95A
Description:	Y-box protein 1 cold shock domain (YB1-CSD)
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [136-265]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GVNVSGSKYR HQLLSRFRKN RKPKIVVGED FDSKETEKLV EAPAVAMEKK KQRKQRKNKN  60
   61 RKQKDQKGAG DAADSSATTE SLGTSSETAS PDSKSCTKII SEEAGLSKID RCDSALDDAG 120
  121 LGAQLIDAQI

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.11
Match:	2j63A
Description:	No description for 2j63A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits