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View Structure Prediction Details

Protein: lips-4
Organism: Caenorhabditis elegans
Length: 340 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lips-4.

Description E-value Query
Range
Subject
Range
gi|157763950 - gi|157763950|ref|XP_001674318.1| Hypothetical protein CBG18901 [Caenorhabditis briggsae AF16]
gi|39594279, gi|... - gi|39594279|emb|CAE71857.1| Hypothetical protein CBG18901 [Caenorhabditis briggsae], gi|187024197|em...
182.0 [0..20] [335..1]

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Predicted Domain #1
Region A:
Residues: [1-340]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRCDPIKSKA DAVLFNHSIM LFSLFAFLVI SCQAASGVNG PLTTDFQNWL KINGYDSYDF  60
   61 VRSDYGVKGS YGGFTKTITK ASKTPVIFIH GNSDSALKTS SMATGWDNTI SYFSTQGFTS 120
  121 AELYATSWQD TNSLKAETRT HDCKDLTRLR KFFEAVLAYT GYAKVSVISH SMGVTLGRKV 180
  181 IQGGIVNGTD GNCNLGVSIS GKVDVFVGIA GANYGLCGCA GTVGLFAPTC NKKNGFWPGD 240
  241 SCGGYTSSFC GYSSTPCNGI SKYSNLLNDM NNSNKKEASY IFSTWSKADD LIGNSDIVWG 300
  301 RPTSLIPLSD GKIIYEKLTH MQSKENTAID QYKMVTSKKV 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 32.522879
Match: 1a8sA
Description: CHLOROPEROXIDASE F/PROPIONATE COMPLEX
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle