YRC Public Data Repository - Protein Structure Prediction

Protein:	CE12158
Organism:	Caenorhabditis elegans
Length:	127 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE12158.

Description	E-value	Query Range	Subject Range
gi\|39587525, gi\|... - gi\|39587525\|emb\|CAE58463.1\| Hypothetical protein CBG01603 [Caenorhabditis briggsae], gi\|187038089\|em... gi\|157757923 - gi\|157757923\|ref\|XP_001671305.1\| Hypothetical protein CBG01603 [Caenorhabditis briggsae AF16]	143.0	[0..1]	[127..1]
CE34340 - status:Partially_confirmed UniProt:P91371 protein_id:AAC24396.2	137.0	[0..1]	[127..1]
CG17218-PA - This gene is referred to in FlyBase by the symbol Dmel\CG17218 (CG17218, FBgn0032421). It is a prote...	131.0	[0..1]	[108..8]
gi\|195148204, gi... - gi\|195148204\|ref\|XP_002015064.1\| GL18618 [Drosophila persimilis], gi\|194107017\|gb\|EDW29060.1\| GL1861... gi\|54645082\|gb\|E... - GA14397-PA [Drosophila pseudoobscura], GA14397 [Drosophila pseudoobscura pseudoobscura] gi\|125985987, gi... - gi\|54645082\|gb\|EAL33822.1\| GA14397 [Drosophila pseudoobscura pseudoobscura], gi\|125985987\|ref\|XP_001...	127.0	[0..4]	[115..11]
gi\|55237569, gi\|... - gi\|58389886\|ref\|XP_317344.2\| ENSANGP00000010503 [Anopheles gambiae str. PEST], gi\|55237569\|gb\|EAA125... AGAP008113-PA, A... - \|protein_coding\|3R:5835869:5838540:1\|gene:AGAP008113, \|protein_coding\|3R:5835869:5838540:1\|gene:AGAP...	117.0	[0..4]	[126..13]
gi\|157106474, gi... - gi\|157106474\|ref\|XP_001649340.1\| hypothetical protein AaeL_AAEL004515 [Aedes aegypti], gi\|108879860\|...	115.0	[0..4]	[126..13]

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Predicted Domain #1

Region A:
Residues: [1-127]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRFLIVFASL FAVSAALNCY ICNSLNQPEC VHNYEKFNKI CPVKSFGGMK SVKPLGCRVS  60
   61 RQYVKEETSI VRECAYTGED IERKSNKGSL GVSRVYSQCS ENLCNSAESS THFLTAAVFI 120
  121 AIFKLFA

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.41
Match:	1lx5B
Description:	Type II activin receptor
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits