YRC Public Data Repository - Protein Structure Prediction

Protein:	CE12136
Organism:	Caenorhabditis elegans
Length:	186 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE12136.

Description	E-value	Query Range	Subject Range
gi\|50732495 - gi\|50732495\|ref\|XP_418662.1\| PREDICTED: similar to MGC68843 protein [Gallus gallus]	129.0	[0..15]	[179..167]
gi\|68385220 - gi\|68385220\|ref\|XP_692457.1\| PREDICTED: similar to alpha 3 type VI collagen isoform 1 precursor [Dan...	127.0	[0..7]	[142..1543]
gi\|13346812 - gi\|13346812\|gb\|AAB99830.2\| thrombospondin [Haemonchus contortus]	126.0	[0..7]	[179..1382]
gi\|39593342, gi\|... - gi\|39593342\|emb\|CAE64812.1\| Hypothetical protein CBG09606 [Caenorhabditis briggsae], gi\|187031704\|em... gi\|157763306 - gi\|157763306\|ref\|XP_001673995.1\| Hypothetical protein CBG09606 [Caenorhabditis briggsae AF16]	126.0	[0..1]	[138..1]
CE31911 - status:Partially_confirmed UniProt:O45916 protein_id:CAA94892.2	124.0	[0..3]	[138..2]
gi\|73976317 - gi\|73976317\|ref\|XP_532462.2\| PREDICTED: similar to Tissue factor pathway inhibitor 2 precursor (TFPI...	124.0	[0..13]	[179..30]
gi\|110756487 - gi\|110756487\|ref\|XP_396472.3\| PREDICTED: similar to Papilin CG33103-PB, isoform B isoform 1 [Apis me...	124.0	[0..9]	[179..1600]
TFPI2_BOVIN - Tissue factor pathway inhibitor 2 OS=Bos taurus GN=TFPI2 PE=2 SV=1	122.0	[0..15]	[179..32]

Back

Predicted Domain #1

Region A:
Residues: [1-186]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILLLLPFLF GASVSQNICD SPVDLGTAKC SNTSSIRYHY DPTVKRCLPF GYTGCGGNEN  60
   61 NFADPRICRQ RCIPQDHHVC PANTPSTLNT GGAKNCGKEE HDEKCAEPNK NYCHHGPNNN 120
  121 GVCCSLESRK KVDQDRELVC PNGKKKYATF RGGKDRAFIG KSCDHKFCPT GFDCQKGNFY 180
  181 SYCCAK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.69897
Match:	1bikA
Description:	X-RAY STRUCTURE OF BIKUNIN FROM THE HUMAN INTER-ALPHA-INHIBITOR COMPLEX
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits