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View Structure Prediction Details

Protein: CE11890
Organism: Caenorhabditis elegans
Length: 154 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE11890.

Description E-value Query
Range
Subject
Range
CE21798 - status:Partially_confirmed UniProt:Q9UAX2 protein_id:AAD14740.1
170.0 [0..1] [142..1]
gi|187027852, gi... - gi|39597847|emb|CAE68539.1| Hypothetical protein CBG14366 [Caenorhabditis briggsae], gi|187027852|em...
gi|157769393 - gi|157769393|ref|XP_001676517.1| Hypothetical protein CBG14366 [Caenorhabditis briggsae AF16]
160.0 [0..5] [139..3]

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Predicted Domain #1
Region A:
Residues: [1-154]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSTILTLLL WSLAGATPPT FIKSPRITSW GSFSAWEDCP AGYYAHGMRI KYESEGQVDN  60
   61 TALDAVELAC KSPSITGSNN DFYIKGDEAD FGTTSDRGSW TGDQFCPVGQ LVCGIQVQLE 120
  121 LSQSVADDTA VNNVDLKCCD FLSMTTASMF PWNK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 27.39794
Match: 1vmoA
Description: Vitelline membrane outer protein-I (VMO-I)
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle