YRC Public Data Repository - Protein Structure Prediction

Protein:	CE11670
Organism:	Caenorhabditis elegans
Length:	232 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE11670.

Description	E-value	Query Range	Subject Range
CE36875 - status:Partially_confirmed UniProt:O16631 protein_id:AAB66105.2	206.0	[0..1]	[232..1]
gi\|73950299 - gi\|73950299\|ref\|XP_544373.2\| PREDICTED: similar to Ectoderm-neural cortex-1 protein (ENC-1) (p53-ind...	158.0	[0..2]	[228..106]
gi\|94396095, gi\|... - gi\|94396095\|ref\|XP_990674.1\| PREDICTED: similar to Kelch-like protein 3 [Mus musculus], gi\|94395152\|...	154.0	[0..2]	[228..105]
gi\|109504624 - gi\|109504624\|ref\|XP_573982.2\| PREDICTED: similar to Kelch-like protein 3 [Rattus norvegicus]	154.0	[0..2]	[228..52]
gi\|6329805 - gi\|6329805\|dbj\|BAA86443.1\| KIAA1129 protein [Homo sapiens]	153.0	[0..2]	[228..90]
gi\|50761655 - gi\|50761655\|ref\|XP_424790.1\| PREDICTED: similar to actin-binding protein [Gallus gallus]	153.0	[0..2]	[228..272]
gi\|109078737 - gi\|109078737\|ref\|XP_001112192.1\| PREDICTED: kelch-like 3 isoform 3 [Macaca mulatta]	153.0	[0..2]	[228..52]
gi\|76652957, gi\|... - gi\|76652957\|ref\|XP_874372.1\| PREDICTED: similar to Ectoderm-neural cortex-1 protein (ENC-1) (p53-ind...	153.0	[0..2]	[228..48]
gi\|55624208 - gi\|55624208\|ref\|XP_526897.1\| PREDICTED: ectodermal-neural cortex (with BTB-like domain) [Pan troglod... gi\|109077598 - gi\|109077598\|ref\|XP_001103216.1\| PREDICTED: ectodermal-neural cortex (with BTB-like domain) [Macaca ... ENSCJAT00000032395 - null tr\|M3XDE8\|M3XDE8... - Ectodermal-neural cortex 1 OS=Felis catus GN=ENC1 PE=4 SV=1 gi\|194220138 - gi\|194220138\|ref\|XP_001918381.1\| PREDICTED: similar to Ectoderm-neural cortex protein 1 (ENC-1) (p53...	153.0	[0..2]	[228..48]

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Predicted Domain #1

Region A:
Residues: [1-232]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRLDVGGRK FSTNRSTLTK FDGYFRKLPK LKDESSTTTR IVIDRSPKHF ETVLNFMRDG  60
   61 SVDLPESLKH LRQLLREAIF YGLEKLIECC KQAMATSEIV AVAPEEPKSP DTVVPLLSDY 120
  121 QVNNNDLQHM VRICGDILRK LGNHNILSLP SVYTFDDYVN YLKSVTSAII PAVYARISNW 180
  181 RHYFKKSDEA HSFVQKIIQW IYAMFAGFNR LPAAVHWELA LLLCVLMVFQ TC

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.69897
Match:	2a79B
Description:	Mammalian Shaker Kv1.2 potassium channel- beta subunit complex
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits