YRC Public Data Repository - Protein Structure Prediction

Protein:	CE11666
Organism:	Caenorhabditis elegans
Length:	178 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE11666.

Description	E-value	Query Range	Subject Range
gi\|76652270 - gi\|76652270\|ref\|XP_617480.2\| PREDICTED: similar to Potassium channel tetramerisation domain containi...	169.0	[0..3]	[167..185]
gi\|73965046 - gi\|73965046\|ref\|XP_852044.1\| PREDICTED: similar to Potassium channel tetramerisation domain containi...	166.0	[0..5]	[167..254]
gi\|46309467, gi\|... - gi\|46309467\|ref\|NP_996932.1\| potassium channel tetramerisation domain containing 5 [Danio rerio], gi...	165.0	[0..2]	[172..32]
gi\|114670388 - gi\|114670388\|ref\|XP_001138510.1\| PREDICTED: potassium channel tetramerisation domain containing 2 [P...	165.0	[0..5]	[167..73]
gi\|109490290, gi... - gi\|62655810\|ref\|XP_220224.3\| PREDICTED: similar to potassium channel tetramerisation domain containi...	164.0	[0..3]	[172..70]
gi\|1136412 - gi\|1136412\|dbj\|BAA11493.1\| KIAA0176 [Homo sapiens]	164.0	[0..5]	[167..75]
gi\|50755761 - gi\|50755761\|ref\|XP_414889.1\| PREDICTED: hypothetical protein [Gallus gallus]	163.0	[0..2]	[172..39]

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Predicted Domain #1

Region A:
Residues: [1-178]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKKLAKLIE NSQLYRKQTE KCKKSRRTDV LQTDASNCIF IDRSPKHFDL ILNFLRDGDV  60
   61 DLPEQGKELK EPRLLIEYGK ILDLVEYQRL GFNVSDIMER YGNQLHIAFQ KNSDPEECKS 120
  121 TLQFKTNIRA ISQRYDSWQY SNANKQFTKF VDDSLAFIAD YADNEDDSEN DTQNADHN

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Detection Method:	PSI-BLAST
Confidence:	35.0
Match:	2a79B
Description:	Mammalian Shaker Kv1.2 potassium channel- beta subunit complex
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits