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View Structure Prediction Details

Protein: CE11666
Organism: Caenorhabditis elegans
Length: 178 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE11666.

Description E-value Query
Range
Subject
Range
gi|76652270 - gi|76652270|ref|XP_617480.2| PREDICTED: similar to Potassium channel tetramerisation domain containi...
169.0 [0..3] [167..185]
gi|73965046 - gi|73965046|ref|XP_852044.1| PREDICTED: similar to Potassium channel tetramerisation domain containi...
166.0 [0..5] [167..254]
gi|46309467, gi|... - gi|46309467|ref|NP_996932.1| potassium channel tetramerisation domain containing 5 [Danio rerio], gi...
165.0 [0..2] [172..32]
gi|114670388 - gi|114670388|ref|XP_001138510.1| PREDICTED: potassium channel tetramerisation domain containing 2 [P...
165.0 [0..5] [167..73]
gi|109490290, gi... - gi|62655810|ref|XP_220224.3| PREDICTED: similar to potassium channel tetramerisation domain containi...
164.0 [0..3] [172..70]
gi|1136412 - gi|1136412|dbj|BAA11493.1| KIAA0176 [Homo sapiens]
164.0 [0..5] [167..75]
gi|50755761 - gi|50755761|ref|XP_414889.1| PREDICTED: hypothetical protein [Gallus gallus]
163.0 [0..2] [172..39]

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Predicted Domain #1
Region A:
Residues: [1-178]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKKLAKLIE NSQLYRKQTE KCKKSRRTDV LQTDASNCIF IDRSPKHFDL ILNFLRDGDV  60
   61 DLPEQGKELK EPRLLIEYGK ILDLVEYQRL GFNVSDIMER YGNQLHIAFQ KNSDPEECKS 120
  121 TLQFKTNIRA ISQRYDSWQY SNANKQFTKF VDDSLAFIAD YADNEDDSEN DTQNADHN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 35.0
Match: 2a79B
Description: Mammalian Shaker Kv1.2 potassium channel- beta subunit complex
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle