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View Structure Prediction Details

Protein: CE11618
Organism: Caenorhabditis elegans
Length: 423 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE11618.

Description E-value Query
Range
Subject
Range
gi|73982452 - gi|73982452|ref|XP_861332.1| PREDICTED: similar to zinc finger protein 289, ID1 regulated isoform 6 ...
254.0 [0..2] [411..6]

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Predicted Domain #1
Region A:
Residues: [1-135]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASPRTRRVL KELRPCDDNN FCFECEANNP QWVSVSYGIW ICLECSGIHR SLGVHLSFVR  60
   61 SVTMDKWKDI ELAKMKAGGN RKFAEFLQSQ PDYKEKWTIQ EKYNSRAAAL FRDKVACEAE 120
  121 GREWSQSTSP AANYV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 35.0
Match: 2crwA
Description: Solution structure of the ArfGap domain of ADP-ribosylation factor GTPaseactivating protein 3 (ArfGap 3)
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [136-208]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PPTLGGMSSQ SKPTNKSSGN SSLGSYYGGN SSYSQSTGDG AYSTQDSNSK YQGFGNTGYV  60
   61 PNQSNSGDDL LAG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [209-423]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AMSGLSMGWS MLSKGASQAA AMAKDVGIQA QQKASQLSEN VSQNNSLFGG VANKASEVGT  60
   61 KSWDGLSSFV KSPSLNAFSG ILAKTGYEDF GGGGGGMSGS SSQNEFNDWL KQSNLPRGTT 120
  121 EGGDHLSNEE LKPTEPVETK KKKERSVKPV QSKEKVTAEN VEDDDSSSTI TQFESSFNKP 180
  181 KTTAPRLAPV AAAPPKKKEE KAKGWDDDAW DLLNQ

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


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Created and Maintained by: Michael Riffle