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View Structure Prediction Details

Protein: pdi-3
Organism: Caenorhabditis elegans
Length: 488 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pdi-3.

Description E-value Query
Range
Subject
Range
gi|157747185 - gi|157747185|ref|XP_001668687.1| Hypothetical protein CBG10789 [Caenorhabditis briggsae AF16]
gi|187030794, gi... - gi|39583606|emb|CAE65710.1| Hypothetical protein CBG10789 [Caenorhabditis briggsae], gi|187030794|em...
386.0 [0..1] [488..1]

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Predicted Domain #1
Region A:
Residues: [1-488]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIWVQAALVA SFLAFASAGG AVLEYTDGNF DDLIQTHDIA LVKFYAPWCG HCKKIAPEYE  60
   61 RAAPKLASND PPVALVKVDC TTEKTVCDKF GVKGFPTLKI FRNGVPAQDY DGPRDADGIV 120
  121 KFMRGQSGPS SKELKTVAEF EKFTGGDENV VIGFFESESK LKDSYLKVAD TERDRFSFAH 180
  181 TSNKDIIKKA GYSDDVVVFV PKKLHNKFDT NEFKYDGNYD TDKIKNFLVH ETVGFAGIRT 240
  241 QGNLFQFEQK PIVIVYYNVD YVKDPKGSNY WRNRVLKVAQ NYKRKVQFAV SNKEEFSSEI 300
  301 ETNGLGERKD SDKPIVAILT NEGKYPMDQE FSVDNLQQFV DEVLAGNAEP YMKSEPIPDE 360
  361 QGDVKVAVGK NFKELIMDAD KDVLIEFYAP WCGHCKSLAP KYEELAEKLN KEDVIIAKMD 420
  421 ATANDVPPMF EVRGFPTLFW LPKNAKSNPI PYNGGREVKD FVSFISKHST DGLKGFSRDG 480
  481 KKKKKTEL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 68.522879
Match: 2b5eA
Description: Crystal Structure of Yeast Protein Disulfide Isomerase
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle